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Page 1
The Biomolecular Interaction Network Database and related tools 2005 update.
Alfarano C, Andrade CE, Anthony K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess E, Buzadzija K, Cavero R, D'Abreo C, Donaldson I, Dorairajoo D, Dumontier MJ, Dumontier MR, Earles V, Farrall R, Feldman H, Garderman E, Gong Y, Gonzaga R, Grytsan V, Gryz E, Gu V, Haldorsen E, Halupa A, Haw R, Hrvojic A, Hurrell L, Isserlin R, Jack F, Juma F, Khan A, Kon T, Konopinsky S, Le V, Lee E, Ling S, Magidin M, Moniakis J, Montojo J, Moore S, Muskat B, Ng I, Paraiso JP, Parker B, Pintilie G, Pirone R, Salama JJ, Sgro S, Shan T, Shu Y, Siew J, Skinner D, Snyder K, Stasiuk R, Strumpf D, Tuekam B, Tao S, Wang Z, White M, Willis R, Wolting C, Wong S, Wrong A, Xin C, Yao R, Yates B, Zhang S, Zheng K, Pawson T, Ouellette BF, Hogue CW. Alfarano C, et al. Among authors: salama jj. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D418-24. doi: 10.1093/nar/gki051. Nucleic Acids Res. 2005. PMID: 15608229 Free PMC article.
Domain-based small molecule binding site annotation.
Snyder KA, Feldman HJ, Dumontier M, Salama JJ, Hogue CW. Snyder KA, et al. Among authors: salama jj. BMC Bioinformatics. 2006 Mar 17;7:152. doi: 10.1186/1471-2105-7-152. BMC Bioinformatics. 2006. PMID: 16545112 Free PMC article.
VISTRAJ: exploring protein conformational space.
Salama JJ, Feldman HJ, Hogue CW. Salama JJ, et al. Bioinformatics. 2001 Sep;17(9):851-2. doi: 10.1093/bioinformatics/17.9.851. Bioinformatics. 2001. PMID: 11590106
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions.
Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, Oesterheld M, Stümpflen V, Salwinski L, Nerothin J, Cerami E, Cusick ME, Vidal M, Gilson M, Armstrong J, Woollard P, Hogue C, Eisenberg D, Cesareni G, Apweiler R, Hermjakob H. Kerrien S, et al. Among authors: salama jj. BMC Biol. 2007 Oct 9;5:44. doi: 10.1186/1741-7007-5-44. BMC Biol. 2007. PMID: 17925023 Free PMC article.
The minimum information required for reporting a molecular interaction experiment (MIMIx).
Orchard S, Salwinski L, Kerrien S, Montecchi-Palazzi L, Oesterheld M, Stümpflen V, Ceol A, Chatr-aryamontri A, Armstrong J, Woollard P, Salama JJ, Moore S, Wojcik J, Bader GD, Vidal M, Cusick ME, Gerstein M, Gavin AC, Superti-Furga G, Greenblatt J, Bader J, Uetz P, Tyers M, Legrain P, Fields S, Mulder N, Gilson M, Niepmann M, Burgoon L, De Las Rivas J, Prieto C, Perreau VM, Hogue C, Mewes HW, Apweiler R, Xenarios I, Eisenberg D, Cesareni G, Hermjakob H. Orchard S, et al. Among authors: salama jj. Nat Biotechnol. 2007 Aug;25(8):894-8. doi: 10.1038/nbt1324. Nat Biotechnol. 2007. PMID: 17687370 Review.
Tea and Recurrent Clostridium difficile Infection.
Oman Evans Ii M, Starley B, Galagan JC, Yabes JM, Evans S, Salama JJ. Oman Evans Ii M, et al. Among authors: salama jj. Gastroenterol Res Pract. 2016;2016:4514687. doi: 10.1155/2016/4514687. Epub 2016 Aug 29. Gastroenterol Res Pract. 2016. PMID: 27651790 Free PMC article.