Doreleijers JF - Search Results

1

Solution structure of T4moC, the Rieske ferredoxin component of the toluene 4-monooxygenase complex.

Skjeldal L, Peterson FC, Doreleijers JF, Moe LA, Pikus JD, Westler WM, Markley JL, Volkman BF, Fox BG. Skjeldal L, et al. Among authors: doreleijers jf. J Biol Inorg Chem. 2004 Dec;9(8):945-53. doi: 10.1007/s00775-004-0594-4. Epub 2004 Sep 25. J Biol Inorg Chem. 2004. PMID: 15452777

2

BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures.

Doreleijers JF, Nederveen AJ, Vranken W, Lin J, Bonvin AM, Kaptein R, Markley JL, Ulrich EL. Doreleijers JF, et al. J Biomol NMR. 2005 May;32(1):1-12. doi: 10.1007/s10858-005-2195-0. J Biomol NMR. 2005. PMID: 16041478

3

X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1.

Fox BG, Malone TE, Johnson KA, Madson SE, Aceti D, Bingman CA, Blommel PG, Buchan B, Burns B, Cao J, Cornilescu C, Doreleijers J, Ellefson J, Frederick R, Geetha H, Hruby D, Jeon WB, Kimball T, Kunert J, Markley JL, Newman C, Olson A, Peterson FC, Phillips GN Jr, Primm J, Ramirez B, Rosenberg NS, Runnels M, Seder K, Shaw J, Smith DW, Sreenath H, Song J, Sussman MR, Thao S, Troestler D, Tyler E, Tyler R, Ulrich E, Vinarov D, Vojtik F, Volkman BF, Wesenberg G, Wrobel RL, Zhang J, Zhao Q, Zolnai Z. Fox BG, et al. Proteins. 2005 Oct 1;61(1):206-8. doi: 10.1002/prot.20533. Proteins. 2005. PMID: 16080145 No abstract available.

4

NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB.

Doreleijers JF, Vranken WF, Schulte C, Markley JL, Ulrich EL, Vriend G, Vuister GW. Doreleijers JF, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D519-24. doi: 10.1093/nar/gkr1134. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22139937 Free PMC article.

5

The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries.

Doreleijers JF, Vranken WF, Schulte C, Lin J, Wedell JR, Penkett CJ, Vuister GW, Vriend G, Markley JL, Ulrich EL. Doreleijers JF, et al. J Biomol NMR. 2009 Dec;45(4):389-96. doi: 10.1007/s10858-009-9378-z. Epub 2009 Oct 7. J Biomol NMR. 2009. PMID: 19809795 Free PMC article.

6

BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank.

Doreleijers JF, Mading S, Maziuk D, Sojourner K, Yin L, Zhu J, Markley JL, Ulrich EL. Doreleijers JF, et al. J Biomol NMR. 2003 Jun;26(2):139-46. doi: 10.1023/a:1023514106644. J Biomol NMR. 2003. PMID: 12766409

7

RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank.

Nederveen AJ, Doreleijers JF, Vranken W, Miller Z, Spronk CA, Nabuurs SB, Güntert P, Livny M, Markley JL, Nilges M, Ulrich EL, Kaptein R, Bonvin AM. Nederveen AJ, et al. Among authors: doreleijers jf. Proteins. 2005 Jun 1;59(4):662-72. doi: 10.1002/prot.20408. Proteins. 2005. PMID: 15822098

8

BioMagResBank.

Ulrich EL, Akutsu H, Doreleijers JF, Harano Y, Ioannidis YE, Lin J, Livny M, Mading S, Maziuk D, Miller Z, Nakatani E, Schulte CF, Tolmie DE, Kent Wenger R, Yao H, Markley JL. Ulrich EL, et al. Among authors: doreleijers jf. Nucleic Acids Res. 2008 Jan;36(Database issue):D402-8. doi: 10.1093/nar/gkm957. Epub 2007 Nov 4. Nucleic Acids Res. 2008. PMID: 17984079 Free PMC article.

9

Remediation of the protein data bank archive.

Henrick K, Feng Z, Bluhm WF, Dimitropoulos D, Doreleijers JF, Dutta S, Flippen-Anderson JL, Ionides J, Kamada C, Krissinel E, Lawson CL, Markley JL, Nakamura H, Newman R, Shimizu Y, Swaminathan J, Velankar S, Ory J, Ulrich EL, Vranken W, Westbrook J, Yamashita R, Yang H, Young J, Yousufuddin M, Berman HM. Henrick K, et al. Among authors: doreleijers jf. Nucleic Acids Res. 2008 Jan;36(Database issue):D426-33. doi: 10.1093/nar/gkm937. Epub 2007 Dec 11. Nucleic Acids Res. 2008. PMID: 18073189 Free PMC article.

10

DRESS: a database of REfined solution NMR structures.

Nabuurs SB, Nederveen AJ, Vranken W, Doreleijers JF, Bonvin AM, Vuister GW, Vriend G, Spronk CA. Nabuurs SB, et al. Among authors: doreleijers jf. Proteins. 2004 May 15;55(3):483-6. doi: 10.1002/prot.20118. Proteins. 2004. PMID: 15103611

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