Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

31 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
An open source knowledge graph ecosystem for the life sciences.
Callahan TJ, Tripodi IJ, Stefanski AL, Cappelletti L, Taneja SB, Wyrwa JM, Casiraghi E, Matentzoglu NA, Reese J, Silverstein JC, Hoyt CT, Boyce RD, Malec SA, Unni DR, Joachimiak MP, Robinson PN, Mungall CJ, Cavalleri E, Fontana T, Valentini G, Mesiti M, Gillenwater LA, Santangelo B, Vasilevsky NA, Hoehndorf R, Bennett TD, Ryan PB, Hripcsak G, Kahn MG, Bada M, Baumgartner WA Jr, Hunter LE. Callahan TJ, et al. Among authors: baumgartner wa jr. Sci Data. 2024 Apr 11;11(1):363. doi: 10.1038/s41597-024-03171-w. Sci Data. 2024. PMID: 38605048 Free PMC article.
Ontologizing health systems data at scale: making translational discovery a reality.
Callahan TJ, Stefanski AL, Wyrwa JM, Zeng C, Ostropolets A, Banda JM, Baumgartner WA Jr, Boyce RD, Casiraghi E, Coleman BD, Collins JH, Deakyne Davies SJ, Feinstein JA, Lin AY, Martin B, Matentzoglu NA, Meeker D, Reese J, Sinclair J, Taneja SB, Trinkley KE, Vasilevsky NA, Williams AE, Zhang XA, Denny JC, Ryan PB, Hripcsak G, Bennett TD, Haendel MA, Robinson PN, Hunter LE, Kahn MG. Callahan TJ, et al. Among authors: baumgartner wa jr. NPJ Digit Med. 2023 May 19;6(1):89. doi: 10.1038/s41746-023-00830-x. NPJ Digit Med. 2023. PMID: 37208468 Free PMC article.
Concept recognition as a machine translation problem.
Boguslav MR, Hailu ND, Bada M, Baumgartner WA Jr, Hunter LE. Boguslav MR, et al. Among authors: baumgartner wa jr. BMC Bioinformatics. 2021 Dec 17;22(Suppl 1):598. doi: 10.1186/s12859-021-04141-4. BMC Bioinformatics. 2021. PMID: 34920707 Free PMC article.
SuperCAT: The (New and Improved) Corpus Analysis Toolkit.
Cohen KB, Baumgartner WA Jr, Temnikova I. Cohen KB, et al. Among authors: baumgartner wa jr. LREC Int Conf Lang Resour Eval. 2016 May;2016:2784-2788. LREC Int Conf Lang Resour Eval. 2016. PMID: 29568820 Free PMC article.
KaBOB: ontology-based semantic integration of biomedical databases.
Livingston KM, Bada M, Baumgartner WA Jr, Hunter LE. Livingston KM, et al. Among authors: baumgartner wa jr. BMC Bioinformatics. 2015 Apr 23;16(1):126. doi: 10.1186/s12859-015-0559-3. BMC Bioinformatics. 2015. PMID: 25903923 Free PMC article.
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.
Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA Jr, Bada M, Palmer M, Hunter LE. Verspoor K, et al. Among authors: baumgartner wa jr. BMC Bioinformatics. 2012 Aug 17;13:207. doi: 10.1186/1471-2105-13-207. BMC Bioinformatics. 2012. PMID: 22901054 Free PMC article.
Concept annotation in the CRAFT corpus.
Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner WA Jr, Cohen KB, Verspoor K, Blake JA, Hunter LE. Bada M, et al. Among authors: baumgartner wa jr. BMC Bioinformatics. 2012 Jul 9;13:161. doi: 10.1186/1471-2105-13-161. BMC Bioinformatics. 2012. PMID: 22776079 Free PMC article.
31 results