Amplification of putative chlorocatechol dioxygenase gene fragments from alpha- and beta-Proteobacteria

Can J Microbiol. 1998 May;44(5):482-6. doi: 10.1139/cjm-44-5-482.

Abstract

Redundant primers were designed for the PCR amplification of DNA from chlorocatechol dioxygenase genes. These primers were used successfully to amplify 270- to 279-bp fragments from a variety of 2,4-dichlorophenoxyacetate- and cholorobenzoate-degrading strains, including species of Sphingomonas. Three groups of closely related sequences were amplified: one from chlorobenzoate degraders that was 86% similar to the amino acid sequence of the protein coded by the tfdC gene of Ralstonia eutropha JMP134 (pJP4), a second from Sphingomonas strains that was 70% similar to this amino acid sequence, and a third from diverse 2,4-D degraders that showed only 53% similarity to the product coded by tfdC from pJP4 but 88-100% similarity to the product of the tfdC gene of the plasmid pEST4011 from a Pseudomonas putida strain. The primers should be useful in further study of this gene and in tracking a variety of degraders of chloroaromatic compounds in natural systems.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 2,4-Dichlorophenoxyacetic Acid / metabolism*
  • Amino Acid Sequence
  • Biodegradation, Environmental
  • Chlorobenzoates / metabolism*
  • DNA Primers
  • Dioxygenases*
  • Genes, Bacterial
  • Gram-Negative Bacteria / enzymology*
  • Gram-Negative Bacteria / genetics*
  • Molecular Sequence Data
  • Oxygenases / genetics*
  • Oxygenases / metabolism
  • Polymerase Chain Reaction
  • Sequence Analysis, DNA
  • Soil Microbiology
  • Water Microbiology

Substances

  • Chlorobenzoates
  • DNA Primers
  • 2,4-Dichlorophenoxyacetic Acid
  • Oxygenases
  • Dioxygenases
  • catechol oxygenase II