Sequence of gp41env immunodominant region of HIV type 1 group O from west central Africa

AIDS Res Hum Retroviruses. 1997 Jul 1;13(10):901-4. doi: 10.1089/aid.1997.13.901.

Abstract

PIP: HIV-1 group O is endemic in the west central region of Africa, where the frequency of infection is estimated to be 3-10% of all HIV-1-infected individuals. However, international travel and immigration have led to group O cases being identified in France, Germany, Belgium, Spain, and the US. With the exception of an infected French woman, all reported group O-infected individuals originate from or have a connection to west central Africa. Since most immunoassay reagents are based upon HIV-1 group M, many HIV immunoassays have lower sensitivity for the detection of group O infections. Serum samples were collected from patients at hospitals, tuberculosis (TB) clinics, and STD clinics in endemic regions of Cameroon and Equatorial Guinea in a study of the sequence divergence with group O isolate infections. Screening of the 1086 samples using a range of research and commercial immunoassays found 255 to be HIV-1 seropositive. On the basis of differential reactivity in the various immunoassays, 8 individuals were identified as potentially being infected with group O virus, of which 4 were drawn from TB patients. 7 of the group-O samples were then subjected to polymerase chain reaction (PCR) amplification to verify group O infection. The gp41(env) immunodominant region was successfully amplified and sequenced from 4 of the 7 samples, 2 of which were from the TB patients; 4 of 1086 samples were definitely infected with HIV-1 group O.

MeSH terms

  • Africa, Central
  • Amino Acid Sequence
  • Base Sequence
  • DNA Primers / genetics
  • HIV Envelope Protein gp41 / genetics*
  • HIV Envelope Protein gp41 / immunology
  • HIV Infections / virology
  • HIV-1 / classification
  • HIV-1 / genetics*
  • HIV-1 / immunology*
  • Humans
  • Immunodominant Epitopes / genetics
  • Molecular Sequence Data
  • Phylogeny
  • Polymerase Chain Reaction
  • Sequence Homology, Amino Acid

Substances

  • DNA Primers
  • HIV Envelope Protein gp41
  • Immunodominant Epitopes

Associated data

  • GENBANK/U90132
  • GENBANK/U90133
  • GENBANK/U90134
  • GENBANK/U90135