Structure and importance of the dimerization domain in elongation factor Ts from Thermus thermophilus

Biochemistry. 1996 Aug 13;35(32):10269-78. doi: 10.1021/bi960918w.

Abstract

Elongation factor Ts (EF-Ts) functions as a nucleotide-exchange factor by binding elongation factor Tu (EF-Tu) and accelerating the GDP dissociation from EF-Tu; thus EF-Ts promotes the transition of EF-Tu from the inactive GDP form to the active GTP form. Thermus thermophilus EF-Ts exists as a stable dimer in solution which binds two molecules of EF-Tu to form a (EF-Tu.EF-Ts)2 heterotetramer. Here we report the crystal structure of the dimerization domain of EF-Ts from T. thermophilus refined to 1.7 A resolution. A three-stranded antiparallel beta-sheet from each subunit interacts to form a beta-sandwich that serves as an extensive dimer interface tethered by a disulfide bond. This interface is distinctly different from the predominantly alpha-helical one that stabilizes the EF-Ts dimer from Escherichia coli [Kawashima, T., et al. (1996) Nature 379, 511-518]. To test whether the homodimeric form of T. thermophilus EF-Ts is necessary for catalyzing nucleotide exchange, the present structure was used to design mutational changes within the dimer interface that disrupt the T. thermophilus EF-Ts dimer but not the tertiary structure of the subunits. Surprisingly, EF-Ts monomers created in this manner failed to catalyze nucleotide exchange in EF-Tu, indicating that, in vitro. T. thermophilus EF-Ts functions only as a homodimer.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Biopolymers
  • Catalysis
  • Cattle
  • Guanosine Diphosphate / chemistry
  • Guanosine Triphosphate / chemistry
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Oligodeoxyribonucleotides
  • Peptide Elongation Factor Tu / chemistry
  • Peptide Elongation Factors / chemistry*
  • Peptide Elongation Factors / genetics
  • Protein Conformation
  • Sequence Homology, Amino Acid
  • Thermus thermophilus / chemistry*
  • Thermus thermophilus / genetics

Substances

  • Biopolymers
  • Oligodeoxyribonucleotides
  • Peptide Elongation Factors
  • elongation factor Ts
  • Guanosine Diphosphate
  • Guanosine Triphosphate
  • Peptide Elongation Factor Tu