Isolation of an ion channel gene from Arabidopsis thaliana using the H5 signature sequence from voltage-dependent K+ channels

FEBS Lett. 1996 Jan 2;378(1):19-26. doi: 10.1016/0014-5793(95)01417-9.

Abstract

A degenerate oligonucleotide corresponding to the K+ channel signature sequence (TMTTVGYGD) was used to isolate the genomic and cDNA forms of a new channel gene, AKT3, from Arabidopsis thaliana. The deduced protein sequence has a predicted membrane topography similar to Shaker-like K+ channels. Three distinct modules comprise the carboxyl-terminal half: a nucleotide-binding motif, an ankyrin repeat domain, and a polyglutamate track. Xenopus oocytes injected with cRNA exhibited an inward-rectifying K+ current, demonstrating that the AKT3 polypeptide is a functional transport protein. Two other Arabidopsis K+ transporters (AKT1 and KAT1) share 60% homology with AKT3; together these proteins constitute a family of plant inward-rectifying K+ channels.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Arabidopsis / genetics*
  • Base Sequence
  • Binding Sites
  • Blotting, Southern
  • DNA, Complementary / chemistry
  • DNA, Complementary / isolation & purification
  • DNA, Plant / chemistry
  • DNA, Plant / isolation & purification*
  • DNA, Plant / metabolism
  • Female
  • Gene Expression
  • Introns
  • Molecular Sequence Data
  • Oocytes / metabolism
  • Potassium Channels / chemistry
  • Potassium Channels / genetics*
  • Potassium Channels / metabolism
  • Repetitive Sequences, Nucleic Acid
  • Sequence Alignment
  • Transfection
  • Xenopus laevis

Substances

  • DNA, Complementary
  • DNA, Plant
  • Potassium Channels

Associated data

  • GENBANK/U44744
  • GENBANK/U44745