Structural engineering of the HIV-1 protease molecule with a beta-turn mimic of fixed geometry

Protein Sci. 1993 Jul;2(7):1085-91. doi: 10.1002/pro.5560020702.

Abstract

An important goal in the de novo design of enzymes is the control of molecular geometry. To this end, an analog of the protease from human immunodeficiency virus 1 (HIV-1 protease) was prepared by total chemical synthesis, containing a constrained, nonpeptidic type II' beta-turn mimic of predetermined three-dimensional structure. The mimic beta-turn replaced residues Gly16,17 in each subunit of the homodimeric molecule. These residues constitute the central amino acids of two symmetry-related type I' beta-turns in the native, unliganded enzyme. The beta-turn mimic-containing enzyme analog was fully active, possessed the same substrate specificity as the Gly16,17-containing enzyme, and showed enhanced resistance to thermal inactivation. These results indicate that the precise geometry of the beta-turn at residues 15-18 in each subunit is not critical for activity, and that replacement of the native sequence with a rigid beta-turn mimic can lead to enhanced protein stability. Finally, the successful incorporation of a fixed element of secondary structure illustrates the potential of a "molecular kit set" approach to protein design and synthesis.

MeSH terms

  • Amino Acid Sequence
  • Cysteine / analogs & derivatives
  • Dipeptides / chemistry
  • Enzyme Stability
  • HIV Protease / chemistry*
  • HIV Protease / metabolism
  • Hot Temperature
  • Models, Molecular
  • Molecular Sequence Data
  • Peptides, Cyclic / chemistry
  • Protein Engineering
  • Protein Structure, Secondary
  • Substrate Specificity

Substances

  • Dipeptides
  • Peptides, Cyclic
  • 2-oxo-3-tert-butyloxycarbonylamino-7-thia-1-azabicyclo(4.3.0)nonane-9-carboxylic acid
  • HIV Protease
  • Cysteine