The first intron of human c-fms proto-oncogene contains a processed pseudogene (RPL7P) for ribosomal protein L7

Genomics. 1994 Aug;22(3):641-5. doi: 10.1006/geno.1994.1440.

Abstract

During sequence analysis of the first intron of the human c-fms oncogene, we identified an open reading frame encoding the ribosomal protein L7 (RPL7). The presence of this sequence within intron 1 of the c-fms gene was confirmed by Southern blot hybridization and by sequence analysis of two independent cosmid clones (cos2-e and cos1-22) that span the human genomic c-fms locus. The RPL7 sequence was detected in a region of sequence overlapped by the cos2-e and cos1-22 cosmid clones but oriented opposite to the c-fms gene. We demonstrated that the sequence is identical to the full-length RPL7 cDNA sequence, but lacks any recognizable introns, has a 30-bp poly(A) tail, and is bracketed by two perfect direct repeats of 14 bp. We also showed that despite the fact that the 5' flanking region of the RPL7 sequence contains a potential TATA box upstream of an intact open reading frame, this pseudogene (RPL7P) is not actively transcribed.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Carrier Proteins / genetics
  • Chromosome Mapping
  • Cloning, Molecular
  • Cosmids / genetics
  • Cytokines / genetics
  • DNA, Complementary / genetics
  • Genes, fms*
  • Humans
  • Introns
  • Molecular Sequence Data
  • Open Reading Frames
  • Proto-Oncogene Mas
  • Pseudogenes*
  • RNA Processing, Post-Transcriptional
  • Repetitive Sequences, Nucleic Acid
  • Ribosomal Proteins / genetics*
  • Sequence Homology, Nucleic Acid
  • TATA Box / genetics

Substances

  • Carrier Proteins
  • Cytokines
  • DNA, Complementary
  • MAS1 protein, human
  • Proto-Oncogene Mas
  • RPL7 protein, human
  • Ribosomal Proteins
  • pleiotrophin

Associated data

  • GENBANK/X72686
  • GENBANK/X72687