A family of U1 pseudogenes in Bombyx mori may be derived from an ancestral pseudogene

Insect Mol Biol. 1994 May;3(2):117-22. doi: 10.1111/j.1365-2583.1994.tb00158.x.

Abstract

Seven EMBL-4 lambda clones containing U1 small nuclear RNA sequences were isolated from a Bombyx mori genomic library. Six of the seven represent unique sequences. The six unique U1 sequences exhibit fixed point 3'-end truncation. Five out of the six clones share immediate 3'-end flanking sequences while two share 5'-end flanking sequences. Fixed point 3'-end truncation and a hierarchy of shared to unique diagnostic mutations may suggest a family of U1 pseudogenes generated from a reverse-transcribed class II pseudogene in B. mori. An ancestral 'master' U1 pseudogene capable of RNA- and/or DNA-mediated transposition may give rise to generations of U1 pseudogenes that include the original pseudogene's flanking sequences. Identical 3'-end truncation in some of these U1 sequences can be explained by RNA self-priming due to intra-strand binding prior to reverse transcription.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • Base Sequence
  • Bombyx / genetics*
  • Cloning, Molecular
  • DNA / genetics
  • DNA Primers / genetics
  • Genes, Insect*
  • Genomic Library
  • Models, Genetic
  • Molecular Sequence Data
  • Mutation
  • Pseudogenes*
  • RNA, Small Nuclear / genetics*
  • Sequence Homology, Nucleic Acid
  • Transcription, Genetic

Substances

  • DNA Primers
  • RNA, Small Nuclear
  • DNA

Associated data

  • GENBANK/U03116
  • GENBANK/U03117
  • GENBANK/U03118
  • GENBANK/U03119