Genome-wide identification and analysis of ascorbate peroxidase (APX) gene family in hemp (Cannabis sativa L.) under various abiotic stresses

PeerJ. 2024 Apr 26:12:e17249. doi: 10.7717/peerj.17249. eCollection 2024.

Abstract

Ascorbate peroxidase (APX) plays a critical role in molecular mechanisms such as plant development and defense against abiotic stresses. As an important economic crop, hemp (Cannabis sativa L.) is vulnerable to adverse environmental conditions, such as drought, cold, salt, and oxidative stress, which lead to a decline in yield and quality. Although APX genes have been characterized in a variety of plants, members of the APX gene family in hemp have not been completely identified. In this study, we (1) identified eight members of the CsAPX gene family in hemp and mapped their locations on the chromosomes using bioinformatics analysis; (2) examined the physicochemical characteristics of the proteins encoded by these CsAPX gene family members; (3) investigated their intraspecific collinearity, gene structure, conserved domains, conserved motifs, and cis-acting elements; (4) constructed a phylogenetic tree and analyzed interspecific collinearity; and (5) ascertained expression differences in leaf tissue subjected to cold, drought, salt, and oxidative stresses using quantitative real-time-PCR (qRT-PCR). Under all four stresses, CsAPX6, CsAPX7, and CsAPX8 consistently exhibited significant upregulation, whereas CsAPX2 displayed notably higher expression levels under drought stress than under the other stresses. Taken together, the results of this study provide basic genomic information on the expression of the APX gene family and pave the way for studying the role of APX genes in abiotic stress.

Keywords: Abiotic stresses; Bioinformatics analysis; CsAPX gene family; Expression patterns; Hemp.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ascorbate Peroxidases* / genetics
  • Ascorbate Peroxidases* / metabolism
  • Cannabis* / enzymology
  • Cannabis* / genetics
  • Cannabis* / metabolism
  • Chromosome Mapping
  • Chromosomes, Plant / genetics
  • Droughts
  • Gene Expression Regulation, Plant*
  • Genome, Plant / genetics
  • Multigene Family / genetics
  • Oxidative Stress / genetics
  • Phylogeny*
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Stress, Physiological* / genetics

Substances

  • Ascorbate Peroxidases
  • Plant Proteins

Grants and funding

This work was supported by the Basic Research Operating Expenses of Provincial Undergraduate Universities of Hemp in Heilongjiang Province (145109508, 145209514). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.