Decoding bioactive signals of the RNA secretome: the cell-free messenger RNA catalogue

Expert Rev Mol Med. 2024 Apr 29:26:e12. doi: 10.1017/erm.2024.12.

Abstract

Despite gene-expression profiling being one of the most common methods to evaluate molecular dysregulation in tissues, the utilization of cell-free messenger RNA (cf-mRNA) as a blood-based non-invasive biomarker analyte has been limited compared to other RNA classes. Recent advancements in low-input RNA-sequencing and normalization techniques, however, have enabled characterization as well as accurate quantification of cf-mRNAs allowing direct pathological insights. The molecular profile of the cell-free transcriptome in multiple diseases has subsequently been characterized including, prenatal diseases, neurological disorders, liver diseases and cancers suggesting this biological compartment may serve as a disease agnostic platform. With mRNAs packaged in a myriad of extracellular vesicles and particles, these signals may be used to develop clinically actionable, non-invasive disease biomarkers. Here, we summarize the recent scientific developments of extracellular mRNA, biology of extracellular mRNA carriers, clinical utility of cf-mRNA as disease biomarkers, as well as proposed functions in cell and tissue pathophysiology.

Keywords: cell free messenger RNA; extracellular particles; extracellular vesicles; liquid biopsy; non-invasive biomarker.

Publication types

  • Review
  • Research Support, Non-U.S. Gov't
  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • Biomarkers*
  • Cell-Free Nucleic Acids*
  • Extracellular Vesicles / metabolism
  • Humans
  • RNA, Messenger* / genetics
  • RNA, Messenger* / metabolism
  • Transcriptome