Revealing the Complete Bispecific Phosphatase Genes (DUSPs) across the Genome and Investigating the Expression Patterns of GH_A11G3500 Resistance against Verticillium wilt

Int J Mol Sci. 2024 Apr 19;25(8):4500. doi: 10.3390/ijms25084500.

Abstract

DUSPs, a diverse group of protein phosphatases, play a pivotal role in orchestrating cellular growth and development through intricate signaling pathways. Notably, they actively participate in the MAPK pathway, which governs crucial aspects of plant physiology, including growth regulation, disease resistance, pest resistance, and stress response. DUSP is a key enzyme, and it is the enzyme that limits the rate of cell metabolism. At present, complete understanding of the DUSP gene family in cotton and its specific roles in resistance to Verticillium wilt (VW) remains elusive. To address this knowledge gap, we conducted a comprehensive identification and analysis of four key cotton species: Gossypium arboreum, Gossypium barbadense, Gossypium hirsutum, and Gossypium raimondii. The results revealed the identification of a total of 120 DUSP genes in the four cotton varieties, which were categorized into six subgroups and randomly distributed at both ends of 26 chromosomes, predominantly localized within the nucleus. Our analysis demonstrated that closely related DUSP genes exhibited similarities in terms of the conserved motif composition and gene structure. A promoter analysis performed on the GhDUSP gene promoter revealed the presence of several cis-acting elements, which are associated with abiotic and biotic stress responses, as well as hormone signaling. A tissue expression pattern analysis demonstrated significant variations in GhDUSP gene expression under different stress conditions, with roots exhibiting the highest levels, followed by stems and leaves. In terms of tissue-specific detection, petals, leaves, stems, stamens, and receptacles exhibited higher expression levels of the GhDUSP gene. The gene expression analysis results for GhDUSPs under stress suggest that DUSP genes may have a crucial role in the cotton response to stress in cotton. Through Virus-Induced Gene Silencing (VIGS) experiments, the silencing of the target gene significantly reduced the resistance efficiency of disease-resistant varieties against Verticillium wilt (VW). Consequently, we conclude that GH_A11G3500-mediated bispecific phosphorylated genes may serve as key regulators in the resistance of G. hirsutum to Verticillium wilt (VW). This study presents a comprehensive structure designed to provide an in-depth understanding of the potential biological functions of cotton, providing a strong foundation for further research into molecular breeding and resistance to plant pathogens.

Keywords: Mitogen-Activated Protein Kinase; Verticillium wilt; bispecific protein phosphatase; phosphorylation; upland cotton.

MeSH terms

  • Disease Resistance* / genetics
  • Dual-Specificity Phosphatases / genetics
  • Dual-Specificity Phosphatases / metabolism
  • Gene Expression Regulation, Plant*
  • Genome, Plant
  • Gossypium* / genetics
  • Gossypium* / microbiology
  • Phylogeny
  • Plant Diseases* / genetics
  • Plant Diseases* / microbiology
  • Plant Proteins* / genetics
  • Plant Proteins* / metabolism
  • Verticillium / pathogenicity

Substances

  • Plant Proteins
  • Dual-Specificity Phosphatases

Grants and funding

This work was supported by department of Agriculture and Rural Affairs of Xinjiang and the Autonomous Region’s “Tianshan Talents” Training Program—“Three rural” backbone Talents—High-level Talents Project for Modern Agriculture and Animal Husbandry Development: “Green and Efficient Prevention and Control Technology of Cotton Main Pests and Diseases” (2023SNGGGCC016), and Key research and development of the autonomous region—“double 30A” early maturity mechanical cotton variety breeding and quality improvement key technology research and demonstration (2022B02052-1).