Recent Advances of Oxalate Decarboxylase: Biochemical Characteristics, Catalysis Mechanisms, and Gene Expression and Regulation

J Agric Food Chem. 2024 May 8;72(18):10163-10178. doi: 10.1021/acs.jafc.4c00172. Epub 2024 Apr 23.

Abstract

Oxalate decarboxylase (OXDC) is a typical Mn2+/Mn3+ dependent metal enzyme and splits oxalate to formate and CO2 without any organic cofactors. Fungi and bacteria are the main organisms expressing the OXDC gene, but with a significantly different mechanism of gene expression and regulation. Many articles reported its potential applications in the clinical treatment of hyperoxaluria, low-oxalate food processing, degradation of oxalate salt deposits, oxalate acid diagnostics, biocontrol, biodemulsifier, and electrochemical oxidation. However, some questions still remain to be clarified about the role of substrate binding and/or protein environment in modulating the redox properties of enzyme-bound Mn(II)/Mn(III), the nature of dioxygen involved in the catalytic mechanism, and how OXDC acquires Mn(II) /Mn(III). This review mainly summarizes its biochemical and structure characteristics, gene expression and regulation, and catalysis mechanism. We also deep-mined oxalate decarboxylase gene data from National Center for Biotechnology Information to give some insights to explore new OXDC with diverse biochemical properties.

Keywords: catalysis mechanism; gene expression and regulation; oxalate; oxalate decarboxylase; structure.

Publication types

  • Review

MeSH terms

  • Animals
  • Bacteria* / enzymology
  • Bacteria* / genetics
  • Bacteria* / metabolism
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Biocatalysis
  • Carboxy-Lyases* / chemistry
  • Carboxy-Lyases* / genetics
  • Carboxy-Lyases* / metabolism
  • Catalysis
  • Fungal Proteins / chemistry
  • Fungal Proteins / genetics
  • Fungal Proteins / metabolism
  • Fungi / enzymology
  • Fungi / genetics
  • Gene Expression Regulation, Enzymologic
  • Humans
  • Oxalates / chemistry
  • Oxalates / metabolism

Substances

  • oxalate decarboxylase
  • Carboxy-Lyases
  • Fungal Proteins
  • Oxalates
  • Bacterial Proteins