Identification of a multidrug resistance genomic island harboring a nonfunctional optrA gene in Campylobacter coli of chicken origin

Vet Microbiol. 2024 Jun:293:110083. doi: 10.1016/j.vetmic.2024.110083. Epub 2024 Apr 4.

Abstract

Campylobacter spp., such as Campylobacter jejuni and Campylobacter coli, are important zoonotic Gram-negative pathogens that cause acute intestinal diseases in humans. In this study, a retrospective analysis was conducted on previously collected Campylobacter isolates from antimicrobial resistance surveillance. A total of 29 optrA-positive C. coli strains were identified and subjected to second-generation sequencing. Multilocus sequence typing and single nucleotide polymorphism analyses demonstrated that the 29 optrA-positive isolates were genetically homogeneous. Notably, among the 29 isolated strains, the ΔoptrA variants exhibit a nonsense mutation at position 979 where the base C is substituted by T, leading to the formation of a premature termination codon. The alignment of sequences and genetic environmental characteristics suggested that ΔoptrA located on a chromosomally carried multidrug-resistant genomic island. There are other resistant genes on the multidrug resistance genomic island, such as aph(2'')-If, aph(3')-III, aadE, tet(O), tet(L), cat, erm(A), optrA and blaOXA-61. As a result, the 29 ΔoptrA-positive strains displayed susceptibility to both florfenicol and linezolid. The ΔoptrA gene is linked to the erm(A) gene, resulting in the formation of translocatable unit (TU) that are encompassed by two copies of IS1216 mobile elements. Multiple occurrences of similar TUs have been documented in numerous C. coli and provided evidence for the significance of TUs in facilitating the transfer of drug resistance genes in C. coli.

Keywords: Campylobacter; Multidrug resistance genomic island; ΔoptrA.

MeSH terms

  • Animals
  • Anti-Bacterial Agents* / pharmacology
  • Bacterial Proteins / genetics
  • Campylobacter Infections* / microbiology
  • Campylobacter Infections* / veterinary
  • Campylobacter coli* / drug effects
  • Campylobacter coli* / genetics
  • Chickens* / microbiology
  • Drug Resistance, Multiple, Bacterial* / genetics
  • Genomic Islands* / genetics
  • Microbial Sensitivity Tests
  • Multilocus Sequence Typing
  • Polymorphism, Single Nucleotide
  • Poultry Diseases / microbiology
  • Retrospective Studies

Substances

  • Anti-Bacterial Agents
  • Bacterial Proteins