Multi-omics staging of locally advanced rectal cancer predicts treatment response: a pilot study

Radiol Med. 2024 May;129(5):712-726. doi: 10.1007/s11547-024-01811-0. Epub 2024 Mar 27.

Abstract

Treatment response assessment of rectal cancer patients is a critical component of personalized cancer care and it allows to identify suitable candidates for organ-preserving strategies. This pilot study employed a novel multi-omics approach combining MRI-based radiomic features and untargeted metabolomics to infer treatment response at staging. The metabolic signature highlighted how tumor cell viability is predictively down-regulated, while the response to oxidative stress was up-regulated in responder patients, showing significantly reduced oxoproline values at baseline compared to non-responder patients (p-value < 10-4). Tumors with a high degree of texture homogeneity, as assessed by radiomics, were more likely to achieve a major pathological response (p-value < 10-3). A machine learning classifier was implemented to summarize the multi-omics information and discriminate responders and non-responders. Combining all available radiomic and metabolomic features, the classifier delivered an AUC of 0.864 (± 0.083, p-value < 10-3) with a best-point sensitivity of 90.9% and a specificity of 81.8%. Our results suggest that a multi-omics approach, integrating radiomics and metabolomic data, can enhance the predictive value of standard MRI and could help to avoid unnecessary surgical treatments and their associated long-term complications.

Keywords: Magnetic resonance imaging; Metabolomics; Multi-omics; Radiomics; Rectal cancer; Treatment response.

MeSH terms

  • Adult
  • Aged
  • Female
  • Humans
  • Machine Learning
  • Magnetic Resonance Imaging* / methods
  • Male
  • Metabolomics*
  • Middle Aged
  • Multiomics
  • Neoplasm Staging*
  • Pilot Projects
  • Predictive Value of Tests
  • Rectal Neoplasms* / diagnostic imaging
  • Rectal Neoplasms* / pathology
  • Rectal Neoplasms* / therapy
  • Sensitivity and Specificity
  • Treatment Outcome