DDX6 modulates P-body and stress granule assembly, composition, and docking

J Cell Biol. 2024 Jun 3;223(6):e202306022. doi: 10.1083/jcb.202306022. Epub 2024 Mar 27.

Abstract

Stress granules and P-bodies are ribonucleoprotein (RNP) granules that accumulate during the stress response due to the condensation of untranslating mRNPs. Stress granules form in part by intermolecular RNA-RNA interactions and can be limited by components of the RNA chaperone network, which inhibits RNA-driven aggregation. Herein, we demonstrate that the DEAD-box helicase DDX6, a P-body component, can also limit the formation of stress granules, independent of the formation of P-bodies. In an ATPase, RNA-binding dependent manner, DDX6 limits the partitioning of itself and other RNPs into stress granules. When P-bodies are limited, proteins that normally partition between stress granules and P-bodies show increased accumulation within stress granules. Moreover, we show that loss of DDX6, 4E-T, and DCP1A increases P-body docking with stress granules, which depends on CNOT1 and PAT1B. Taken together, these observations identify a new role for DDX6 in limiting stress granules and demonstrate that P-body components can influence stress granule composition and docking with P-bodies.

MeSH terms

  • Adenosine Triphosphatases
  • Cell Line, Tumor
  • DEAD-box RNA Helicases* / metabolism
  • Humans
  • Processing Bodies* / chemistry
  • Processing Bodies* / metabolism
  • RNA
  • Stress Granules* / chemistry
  • Stress Granules* / metabolism

Substances

  • Adenosine Triphosphatases
  • RNA
  • DDX6 protein, human
  • DEAD-box RNA Helicases