Cell surface β-lactamase recruitment: A facile selection to identify protein-protein interactions

Protein Sci. 2024 Apr;33(4):e4919. doi: 10.1002/pro.4919.

Abstract

Protein-protein interactions (PPIs) are central to many cellular processes, and the identification of novel PPIs is a critical step in the discovery of protein therapeutics. Simple methods to identify naturally existing or laboratory evolved PPIs are therefore valuable research tools. We have developed a facile selection that links PPI-dependent β-lactamase recruitment on the surface of Escherichia coli with resistance to ampicillin. Bacteria displaying a protein that forms a complex with a specific protein-β-lactamase fusion are protected from ampicillin-dependent cell death. In contrast, bacteria that do not recruit β-lactamase to the cell surface are killed by ampicillin. Given its simplicity and tunability, we anticipate this selection will be a valuable addition to the palette of methods for illuminating and interrogating PPIs.

Keywords: bacterial display; nanobody; protein-protein interaction; selection.

MeSH terms

  • Ampicillin* / metabolism
  • Ampicillin* / pharmacology
  • Anti-Bacterial Agents / metabolism
  • Bacteria / metabolism
  • Cell Membrane / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • beta-Lactamases* / genetics
  • beta-Lactamases* / metabolism

Substances

  • beta-Lactamases
  • Ampicillin
  • Anti-Bacterial Agents