Synergizing structure and function: Cinnamoyl hydroxamic acids as potent urease inhibitors

Bioorg Chem. 2024 May:146:107247. doi: 10.1016/j.bioorg.2024.107247. Epub 2024 Mar 7.

Abstract

The current investigation encompasses the structural planning, synthesis, and evaluation of the urease inhibitory activity of a series of molecular hybrids of hydroxamic acids and Michael acceptors, delineated from the structure of cinnamic acids. The synthesized compounds exhibited potent urease inhibitory effects, with IC50 values ranging from 3.8 to 12.8 µM. Kinetic experiments unveiled that the majority of the synthesized hybrids display characteristics of mixed inhibitors. Generally, derivatives containing electron-withdrawing groups on the aromatic ring demonstrate heightened activity, indicating that the increased electrophilicity of the beta carbon in the Michael Acceptor moiety positively influences the antiureolytic properties of this compounds class. Biophysical and theoretical investigations further corroborated the findings obtained from kinetic assays. These studies suggest that the hydroxamic acid core interacts with the urease active site, while the Michael acceptor moiety binds to one or more allosteric sites adjacent to the active site.

Keywords: Interaction mechanism; Urease inhibitor; α,β-unsaturated hydroxamic acid.

MeSH terms

  • Allosteric Site
  • Catalytic Domain
  • Cinnamates / chemistry
  • Enzyme Inhibitors / chemistry
  • Hydroxamic Acids* / chemistry
  • Kinetics
  • Molecular Docking Simulation
  • Molecular Structure
  • Structure-Activity Relationship
  • Urease*

Substances

  • Enzyme Inhibitors
  • Hydroxamic Acids
  • Urease
  • Cinnamates