The ever-increasing utility of imaging technology in proton exchange membrane water electrolyzer research raises the demand for rapid and precise image analysis. In particular, for optical video recordings, the challenge primarily lies in the large number of frames that impede the delineation of bubble dynamics with standard methods. In order to address this problem, the present study supports the automation of data analysis to facilitate swift, comprehensive, and measurable insights from captured imagery. We present a deep learning-based framework to perform high-throughput analyses of bubble dynamics using optical images of proton exchange membrane water electrolyzers. Leveraging a relatively small annotated imaging dataset of just 35 images, various configurations of the U-Net architecture were trained to perform bubble segmentation tasks. The best model achieved a precision of 95%, a recall of 78%, and an F1-score of 86% on the validation set. Subsequent to segmentation, the methodology enabled the rapid extraction of parameters such as time-resolved bubble area, size distributions, bubble position probability density, and individual bubble shape analytics. The findings underscore the potential of deep learning to enhance the analysis of polymer electrolyte membrane water electrolyzer imaging, offering a path toward more efficient and informative evaluations in electrochemical research.