pH-dependent complex formation with TAR RNA and DNA: application towards logic gates

Analyst. 2024 Mar 25;149(7):1976-1980. doi: 10.1039/d4an00074a.

Abstract

Nucleic acid-based logic gates have shown great potential in biotechnology, medicine as well as diagnostics. Herein, we have constructed pH-responsive logic devices by utilizing HIV-1 TAR hairpins in combination with a thiazole peptide that exhibits turn-on fluorescence upon interacting with TAR RNA or DNA. Based on this, INHIBIT-AND and YES-INHIBIT-AND logic gates were constructed in parallel. The pH alteration leads to conformational changes of the hairpin structure, enabling the construction of a multi-reset reusable logic system which could be developed for in vitro sensing of the HIV-1 viral RNA.

MeSH terms

  • Computers, Molecular
  • DNA* / chemistry
  • DNA* / genetics
  • Hydrogen-Ion Concentration
  • Logic
  • RNA* / genetics

Substances

  • RNA
  • DNA