Multi-platform omics sequencing dissects the atlas of plasma-derived exosomes in rats with or without depression-like behavior after traumatic spinal cord injury

Prog Neuropsychopharmacol Biol Psychiatry. 2024 Jun 8:132:110987. doi: 10.1016/j.pnpbp.2024.110987. Epub 2024 Mar 2.

Abstract

Background: Exosomes can penetrate the blood-brain barrier for material exchange between the peripheral and central nervous systems. Differences in exosome contents could explain the susceptibility of different individuals to depression-like behavior after traumatic spinal cord injury (TSCI).

Methods: Hierarchical clustering was used to integrate multiple depression-related behavioral outcomes in sham and TSCI rats and ultimately identify non-depressed and depressed rats. The difference in plasma exosome contents between non-depressed and depressed rats after TSCI was assessed in 15 random subjects by performing plasma exosome transcriptomics, mass spectroscope-based proteomics, and non-targeted metabolomics analyses.

Results: The results revealed that about 27.6% of the rats developed depression-like behavior after TSCI. Totally, 10 differential metabolites, 81 differentially expressed proteins (DEPs), 373 differentially expressed genes (DEGs), and 55 differentially expressed miRNAs (DEmiRNAs) were identified between non-depressed TSCI and sham rats. Meanwhile, 37 differential metabolites, 499 DEPs, 1361 DEGs, and 89 DEmiRNAs were identified between depressed and non-depressed TSCI rats. Enrichment analysis showed that the progression of depression-like behavior after TSCI may be related to amino acid metabolism disorder and dysfunction of multiple signaling pathways, including endocytosis, lipid and atherosclerosis, toll-like receptor, TNF, and PI3K-Akt pathway.

Conclusion: Overall, our study systematically revealed for the first time the differences in plasma exosome contents between non-depressed and depressed rats after TSCI, which will help broaden our understanding of the complex molecular mechanisms involved in brain functional recombination after TSCI.

Keywords: Depression; Exosome; Metabolomics; Multi-omics; Proteomics; Transcriptomics; Traumatic spinal cord injury.

MeSH terms

  • Animals
  • Depression / etiology
  • Exosomes* / metabolism
  • Humans
  • MicroRNAs*
  • Phosphatidylinositol 3-Kinases
  • Rats
  • Spinal Cord Injuries* / complications
  • Spinal Cord Injuries* / metabolism

Substances

  • Phosphatidylinositol 3-Kinases
  • MicroRNAs