Genome-wide association studies reveal stable loci for wheat grain size under different sowing dates

PeerJ. 2024 Feb 26:12:e16984. doi: 10.7717/peerj.16984. eCollection 2024.

Abstract

Background: Wheat (Tritium aestivum L.) production is critical for global food security. In recent years, due to climate change and the prolonged growing period of rice varieties, the delayed sowing of wheat has resulted in a loss of grain yield in the area of the middle and lower reaches of the Yangtze River. It is of great significance to screen for natural germplasm resources of wheat that are resistant to late sowing and to explore genetic loci that stably control grain size and yield.

Methods: A collection of 327 wheat accessions from diverse sources were subjected to genome-wide association studies using genotyping-by-sequencing. Field trials were conducted under normal, delayed, and seriously delayed sowing conditions for grain length, width, and thousand-grain weight at two sites. Additionally, the additive main effects and multiplicative interaction (AMMI) model was applied to evaluate the stability of thousand-grain weight of 327 accessions across multiple sowing dates.

Results: Four wheat germplasm resources have been screened, demonstrating higher stability of thousand-grain weight. A total of 43, 35, and 39 significant MTAs were determined across all chromosomes except for 4D under the three sowing dates, respectively. A total of 10.31% of MTAs that stably affect wheat grain size could be repeatedly identified in at least two sowing dates, with PVE ranging from 0.03% to 38.06%. Among these, six were for GL, three for GW, and one for TGW. There were three novel and stable loci (4A_598189950, 4B_307707920, 2D_622241054) located in conserved regions of the genome, which provide excellent genetic resources for pyramid breeding strategies of superior loci. Our findings offer a theoretical basis for cultivar improvement and marker-assisted selection in wheat breeding practices.

Keywords: Breeding; Genome-wide association study; Grain size; Sowing dates; Stability; Wheat.

MeSH terms

  • Edible Grain / genetics
  • Genome-Wide Association Study*
  • Phenotype
  • Plant Breeding
  • Quantitative Trait Loci*
  • Triticum / genetics

Grants and funding

This work was supported by the Jiangsu Province seed industry revitalization project (JBGS2021006), the National Key Research and Development (2017YFD0100803), and a Project Funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions, China. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.