[Infection status and Molecular types of Rhinovirus among Cases of Acute Respiratory Tract Infections in Luohe City, Henan Province, from 2017 to 2022]

Zhonghua Yu Fang Yi Xue Za Zhi. 2024 Feb 23:58:1-8. doi: 10.3760/cma.j.cn112150-20231207-00411. Online ahead of print.
[Article in Chinese]

Abstract

Objective: To understand the infection status and molecular types of rhinovirus (RV) among cases of Acute Respiratory Infections (ARIs) in Luohe City, Henan Province, from 2017 to 2022. Methods: From October 2017 to June 2022, clinical and epidemiological data were collected from 2 270 cases of ARIs at Luohe Central Hospital in Henan Province. Throat swab specimens were obtained from these cases. Real-time quantitative polymerase chain reaction (qPCR) was used to screen for RV-positive specimens. Subsequently, the positive samples were subjected to nested reverse transcription polymerase chain reaction (nested RT-PCR) to amplify the full-length VP1 region. Using the MEGA software, along with 169 RV reference strains recommended by the International Committee on Taxonomy of Viruses, a phylogenetic tree was constructed to determine RV types. Results: Among the 2 270 cases of ARIs, there were 1 283 male cases (56.52%). The median age (Q1, Q3) was 3 (1, 6) years, with the population under 5 years old accounting for 68.59% (1 557/2 270). RV was detected in 137 cases (6.04%), of which 68 cases (49.64%) showed co-detection with other viruses, with the most common being co-detection with enterovirus, accounting for 14.60% (20/137). The RV detection rates in the age groups of 0~4 years, 5~14 years, 15~59 years, and≥60 years were 6.42% (100/1 557), 4.69% (21/448), 3.80% (6/158), and 9.35% (10/107), respectively, with no statistically significant differences (χ2=5.310, P=0.150). The overall detection rates of RV before (2017-2019) and during (2020-2022) the COVID-19 pandemic showed no statistically significant difference (χ2=1.823, P=0.177). A total of 109 VP1 sequences were obtained, including 62 types. Among them, RV-A, RV-B, and RV-C had 42, 3, and 17 types respectively. Conclusion: RV is one of the predominant pathogens in ARIs cases in Luohe City, Henan Province, from 2017 to 2022. Multiple types of RV co-circulate without any apparent dominant type.

目的: 了解河南省漯河市2017—2022年急性呼吸道感染(ARIs)病例中鼻病毒(RV)的感染状况及其分子型别组成。 方法: 于2017年10月至2022年6月,收集河南省漯河市中心医院2 270例ARIs病例的临床和流行病学资料,并采集病例咽拭子标本,采用实时荧光定量聚合酶链式反应(qPCR)筛选RV阳性标本,随后对阳性标本使用巢式逆转录聚合酶链式反应(nested RT-PCR)扩增VP1区全长,并使用MEGA软件结合国际病毒分类委员会推荐的169条RV参考株序列构建系统进化树以确定RV分型。 结果: 2 270例ARIs病例中,男性病例1 283例(56.52%);年龄MQ1Q3)为3(1,6)岁,5岁以下人群占68.59%(1 557/2 270);137例病例(6.04%)检出RV,其中68例病例(49.64%)与其他病毒合并检出,与肠道病毒的合并检出最常见,占14.60%(20/137)。0~4岁、5~14岁、15~59岁和≥60岁年龄组中RV检出率分别为6.42%(100/1 557)、4.69%(21/448)、3.80%(6/158)和9.35%(10/107),差异无统计学意义(χ2=5.310,P=0.150)。新型冠状病毒感染疫情前(2017—2019年)和期间(2020—2022年),RV总体检出率差异无统计学意义(χ2=1.823,P=0.177)。共获得109条VP1序列,包含62个型别,其中RV-A、RV-B和RV-C三个种分别检出42、3和17个型别。 结论: RV为2017—2022年河南省漯河市ARIs病例中主要流行的病原体之一,存在多个RⅤ型别共流行,无明显优势型别。.

Publication types

  • English Abstract