An acid solution improves the pore-plugging problem in hydraulic fracturing, which in turn improves the permeability of the coal seam. The study aimed to investigate the effect of mixed acid on the micronano mechanical properties and permeability of the coal seam. The surface morphology of acidified coal was analyzed from the micronano scale using atomic force microscopy (AFM) and scanning electron microscopy. Additionally, the micronano scale mechanical characteristics of acidified coal were examined using the mechanical mode in an atomic force microscope. Furthermore, the complexity and connectivity of the micronano pores of samples were investigated using the low-temperature nitrogen adsorption and mercury intrusion porosimetry methods and the fractal theory. The results indicated that the surface minerals of acidified coal were dissolved, loosening the coal and increasing the complexity of the pore structure. Mineral deformation and pore deformation weakened the mechanical properties of coal at the micronano scale, and the mean elastic modulus of acidified coal (B# and E#) decreased by 28.78 and 25.66% compared to that of raw coal. The acid solution effectively enlarged the pore diameter, transitioning from micropores to mesopores and macropores, and the total pore volume of acidified coal increased by 1.88 times and 1.25 times, Kn increased from 0.064 to 0.581 and 0.37, respectively. The type of methane diffusion in the diffusion pores changed from Knudsen diffusion to transition-type diffusion. The tortuosity of the pore structure of acidified coal decreased, the fractal dimension of the tortuosity of the pore structure decreased, and the permeability increased by nearly three times. The research results indicate that the mechanical properties of coal decrease after acidification and that the microstructural changes can promote methane migration (diffusion-seepage), which can provide theoretical guidance for coalbed methane extraction in low-permeability coal reservoirs.