Correlations of SDF-1ɑ and XRCC1 gene polymorphisms with the risk of renal cancer development and bioinformatics studies of SDF-1α and XRCC1 and the prognosis of renal cancer

Sci Rep. 2024 Feb 9;14(1):3367. doi: 10.1038/s41598-024-53808-4.

Abstract

To study the relationships between stromal cell-derived factor-1 (SDF-1ɑ) and renal cell carcinoma (RCC) susceptibility and the presence of single nucleotide polymorphisms in the human X-ray cross-complementary repair gene (XRCC1). Compare SDF-1 based on RCC related data in the TCGA database α, The expression difference of XRCC1 between RCC tissue and normal tissue; Collect 166 newly diagnosed RCC cases and 166 healthy individuals who underwent physical examinations during the same period, and detect genotype using iMLDR method. The results The rs1801157 locus (C:T) of the SDF-1α gene was not significantly associated with the pathohistological type, the rs1799782 locus (G:A) of the XRCC1 gene was associated with the pathohistological type of RCC, and there were interactions between rs1799782 and smoking, alcohol consumption, pesticide exposure, hair dye, and urine holding. The rs1799782 locus of the XRCC1 gene may be a key factor in the pathogenesis and pathological development of RCC. High SDF-1ɑ expression is a protective factor for the overall survival of patients with RCC, and SDF-1ɑ and XRCC1 may be important for the treatment of RCC.

Keywords: Bioinformatics analysis; RCC; SDF-1α gene; SNP; XRCC1 gene.

MeSH terms

  • Carcinoma, Renal Cell* / genetics
  • Case-Control Studies
  • Chemokine CXCL12 / genetics
  • Computational Biology
  • DNA-Binding Proteins / genetics
  • Genetic Predisposition to Disease
  • Genotype
  • Humans
  • Kidney Neoplasms* / genetics
  • Polymorphism, Single Nucleotide
  • Prognosis
  • X-ray Repair Cross Complementing Protein 1 / genetics

Substances

  • DNA-Binding Proteins
  • Chemokine CXCL12
  • X-ray Repair Cross Complementing Protein 1
  • XRCC1 protein, human