For optical waveguides with a layered background which itself is a slab waveguide, a guided mode is a bound state in the continuum (BIC), if it coexists with slab modes propagating outwards in the lateral direction; i.e., there are lateral leakage channels. It is known that generic BICs in optical waveguides with lateral leakage channels are robust in the sense that they still exist if the waveguide is perturbed arbitrarily. However, the theory is not applicable to non-generic BICs which can be defined precisely. Near a BIC, the waveguide supports resonant and leaky modes with a complex frequency and a complex propagation constant, respectively. In this paper, we develop a perturbation theory to show that the resonant and leaky modes near a non-generic BIC have an ultra-high Q factor and ultra-low leakage loss, respectively. Recently, many authors studied merging-BICs in periodic structures through tuning structural parameters. It has been shown that resonant modes near a merging-BIC have an ultra-high Q factor. However, the existing studies on merging-BICs are concerned with specific examples and specific parameters. Moreover, we analyze an arbitrary structural perturbation given by δF(r) to waveguides supporting a non-generic BIC, where F(r) is the perturbation profile and δ is the amplitude, and show that the perturbed waveguide has two BICs for δ > 0 (or δ < 0) and no BIC for δ < 0 (or δ > 0). This implies that a non-generic BIC can be regarded as a merging-BIC (for almost any perturbation profile F) when δ is considered as a parameter. Our study indicates that non-generic BICs have interesting special properties that are useful in applications.