Micro-expression recognition based on ima- ges has made some progress, yet limitations persist. For instance, image-based recognition of micro-expressions is affected by factors such as ambient light, changes in head posture, and facial occlusion. The high temporal resolution of electroencephalogram (EEG) technology can record brain activity associated with micro-expressions and identify them objectively from a neurophysiological standpoint. Accordingly, this study introduces a novel method for recognizing micro-expressions using node efficiency features of brain networks derived from EEG signals. We designed a real-time Supervision and Emotional Expression Suppression (SEES) experimental paradigm to collect video and EEG data reflecting micro- and macro-expression states from 70 participants experiencing positive emotions. By constructing functional brain networks based on graph theory, we analyzed the network efficiencies at both macro- and micro-levels. The participants exhibited lower connection density, global efficiency, and nodal efficiency in the alpha, beta, and gamma networks during micro-expressions compared to macro-expressions. We then selected the optimal subset of nodal efficiency features using a random forest algorithm and applied them to various classifiers, including Support Vector Machine (SVM), Gradient-Boosted Decision Tree (GBDT), Logistic Regression (LR), Random Forest (RF), and eXtreme Gradient Boosting (XGBoost). These classifiers achieved promising accuracy in micro-expression recognition, with SVM exhibiting the highest accuracy of 92.6% when 15 channels were selected. This study provides a new neuroscientific indicator for recognizing micro-expressions based on EEG signals, thereby broadening the potential applications for micro-expression recognition.