TET2-mediated ECM1 hypomethylation promotes the neovascularization in active proliferative diabetic retinopathy

Clin Epigenetics. 2024 Jan 3;16(1):6. doi: 10.1186/s13148-023-01619-1.

Abstract

Background: Studies have shown that tet methylcytosine dioxygenase 2 (TET2) is highly expressed in diabetic retinopathy (DR), which reduces the DNA methylation of downstream gene promoters and activates the transcription. Abnormally expressed TET2 and downstream genes in a high-glucose environment are associated with retinal capillary leakage and neovascularization. Here, we investigated the downstream genes of TET2 and its potential association with neovascularization in proliferative diabetic retinopathy (PDR).

Methods: GSE60436, GSE57362, and GSE158333 datasets were analyzed to identify TET2-related hypomethylated and upregulated genes in PDR. Gene expression and promoter methylation of these genes under high glucose treatment were verified. Moreover, TET2 knockdown was used to assess its impact on tube formation and migration in human retinal microvascular endothelial cells (HRMECs), as well as its influence on downstream genes.

Results: Our analysis identified three key genes (PARVB, PTPRE, ECM1) that were closely associated with TET2 regulation. High glucose-treated HRMECs exhibited increased expression of TET2 and ECM1 while decreasing the promoter methylation level of ECM1. Subsequently, TET2 knockdown led to decreased migration ability and tube formation function of HRMECs. We further found a decreased expression of PARVB, PTPRE, and ECM1, accompanied by an increase in the promoter methylation of ECM1.

Conclusions: Our findings indicate the involvement of dysregulated TET2 expression in neovascularization by regulating the promoter methylation and transcription of downstream genes (notably ECM1), eventually leading to PDR. The TET2-induced hypomethylation of downstream gene promoters represents a potential therapeutic target and offers a novel perspective on the mechanism underlying neovascularization in PDR.

Keywords: DNA methylation; ECM1; Epigenetics; Neovascularization; Proliferative diabetic retinopathy (PDR); TET2.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA Methylation
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism
  • Diabetes Mellitus* / genetics
  • Diabetic Retinopathy* / genetics
  • Dioxygenases* / genetics
  • Dioxygenases* / metabolism
  • Endothelial Cells / metabolism
  • Extracellular Matrix Proteins / genetics
  • Extracellular Matrix Proteins / metabolism
  • Glucose / metabolism
  • Glucose / pharmacology
  • Humans
  • Neovascularization, Pathologic / genetics
  • Neovascularization, Pathologic / metabolism

Substances

  • Glucose
  • ECM1 protein, human
  • Extracellular Matrix Proteins
  • TET2 protein, human
  • DNA-Binding Proteins
  • Dioxygenases