Survey of Phytophthora diversity reveals P. abietivora as a potential Phytophthora root rot pathogen in Québec Christmas tree plantations

Plant Dis. 2023 Dec 21. doi: 10.1094/PDIS-12-23-2670-SR. Online ahead of print.

Abstract

Christmas trees are an economically and culturally important ornamental plant in North America. Many microorganisms are pathogens of firs cultivated as Christmas trees. Among those, Phytophthora causes millions of dollars in damage to plantations annually. In Canada, it is unknown which species are responsible for Phytophthora root rot (PRR) of cultivated Abies species. Between 2019 and 2021, soil and root samples were collected from 40 Christmas tree plantations in Québec province. We used soil baiting and direct isolation from unidentified root fragments to assess the diversity of culturable Phytophthora spp. The obtained isolates were identified using a multi-locus sequencing and phylogenetic approach. A total of 44 isolates were identified, including eight P. chlamydospora, eight P. abietivora, seven P. gonapodyides, three P. gregata, six P. megasperma, and two P. kelmanii isolates, plus 10 isolates belonging to a previously unknown taxon that is phylogenetically close to P. chlamydospora and P. gonapodyides. Among the known species, P. abietivora was the most prevalent isolated species associated with trees showing aboveground PRR-like symptoms. Pathogenicity trials confirmed the pathogenicity potential of P. abietivora on both Fraser fir and balsam fir seedlings. Our study provides a first snapshot of the Phytophthora diversity in Québec's Christmas tree productions and describe multiple potential first associations between Phytophthora species and Abies balsamea and A. fraseri.

Keywords: Baiting; Causal Agent; Christmas tree disease; ITS1-5.8S-ITS2; Oomycetes; Phytophthora isolation; Undescribed Phytophthora.