Structure of the siphophage neck-Tail complex suggests that conserved tail tip proteins facilitate receptor binding and tail assembly

PLoS Biol. 2023 Dec 14;21(12):e3002441. doi: 10.1371/journal.pbio.3002441. eCollection 2023 Dec.

Abstract

Siphophages have a long, flexible, and noncontractile tail that connects to the capsid through a neck. The phage tail is essential for host cell recognition and virus-host cell interactions; moreover, it serves as a channel for genome delivery during infection. However, the in situ high-resolution structure of the neck-tail complex of siphophages remains unknown. Here, we present the structure of the siphophage lambda "wild type," the most widely used, laboratory-adapted fiberless mutant. The neck-tail complex comprises a channel formed by stacked 12-fold and hexameric rings and a 3-fold symmetrical tip. The interactions among DNA and a total of 246 tail protein molecules forming the tail and neck have been characterized. Structural comparisons of the tail tips, the most diversified region across the lambda and other long-tailed phages or tail-like machines, suggest that their tail tip contains conserved domains, which facilitate tail assembly, receptor binding, cell adsorption, and DNA retaining/releasing. These domains are distributed in different tail tip proteins in different phages or tail-like machines. The side tail fibers are not required for the phage particle to orient itself vertically to the surface of the host cell during attachment.

MeSH terms

  • Bacteriophages* / genetics
  • Capsid Proteins / metabolism
  • DNA / metabolism
  • Protein Binding
  • Viral Tail Proteins / chemistry
  • Viral Tail Proteins / genetics
  • Viral Tail Proteins / metabolism

Substances

  • Capsid Proteins
  • DNA
  • Viral Tail Proteins

Grants and funding

This research was supported by the National Natural Science Foundation of China (12034006 and 32071209 to H.L., 32371263 and 31971122 to L.C., 32200994 to W.C.), the Natural Science Foundation of Hunan Province, China (2020JJ2015 to X.L., 2023JJ30379 to L.C.), the Science Foundation for the State Key Laboratory for Infectious Disease Prevention and Control of China (2022SKLID203 to J.S.), and the China Postdoctoral Science Foundation (2021TQ0104 to W.C.). The funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.