Therapeutic potential of natural antisense transcripts and various mechanisms involved for clinical applications and disease prevention

RNA Biol. 2024 Jan;21(1):1-18. doi: 10.1080/15476286.2023.2293335. Epub 2023 Dec 13.

Abstract

Antisense transcription, a prevalent occurrence in mammalian genomes, gives rise to natural antisense transcripts (NATs) as RNA molecules. These NATs serve as agents of diverse transcriptional and post-transcriptional regulatory mechanisms, playing crucial roles in various biological processes vital for cell function and immune response. However, when their normal functions are disrupted, they can contribute to human diseases. This comprehensive review aims to establish the molecular foundation linking NATs to the development of disorders like cancer, neurodegenerative conditions, and cardiovascular ailments. Additionally, we evaluate the potential of oligonucleotide-based therapies targeting NATs, presenting both their advantages and limitations, while also highlighting the latest advancements in this promising realm of clinical investigation.Abbreviations: NATs- Natural antisense transcripts, PRC1- Polycomb Repressive Complex 1, PRC2- Polycomb Repressive Complex 2, ADARs- Adenosine deaminases acting on RNA, BDNF-AS- Brain-derived neurotrophic factor antisense transcript, ASOs- Antisense oligonucleotides, SINEUPs- Inverted SINEB2 sequence-mediated upregulating molecules, PTBP1- Polypyrimidine tract binding protein-1, HNRNPK- heterogeneous nuclear ribonucleoprotein K, MAPT-AS1- microtubule-associated protein tau antisense 1, KCNQ1OT- (KCNQ1 opposite strand/antisense transcript 1, ERK- extracellular signal-regulated kinase 1, USP14- ubiquitin-specific protease 14, EGF- Epidermal growth factor, LSD1- Lysine Specific Demethylase 1, ANRIL- Antisense Noncoding RNA in the INK4 Locus, BWS- Beckwith-Wiedemann syndrome, VEGFA- Vascular Endothelial Growth component A.

Keywords: Natural antisense transcripts; clinical applications; human diseases; immune response; regulatory mechanisms.

Publication types

  • Review

MeSH terms

  • Animals
  • Cell Nucleus
  • Gene Expression Regulation
  • Heterogeneous-Nuclear Ribonucleoproteins / genetics
  • Humans
  • Mammals / genetics
  • Neurodegenerative Diseases*
  • Polypyrimidine Tract-Binding Protein / genetics
  • RNA, Antisense / genetics
  • Transcription, Genetic*
  • Ubiquitin Thiolesterase / genetics

Substances

  • RNA, Antisense
  • PTBP1 protein, human
  • Heterogeneous-Nuclear Ribonucleoproteins
  • Polypyrimidine Tract-Binding Protein
  • USP14 protein, human
  • Ubiquitin Thiolesterase

Grants and funding

This work was supported by the National Natural Science Foundation of China (NSFC) grants [No. 31870745] to Zhongjing Su.