Analysis of IL-1β, TGF-β, IL-5, ACE, PTPN22 gene polymorphisms, and gene expression levels in Turkish children with IgA vasculitis

Mol Biol Rep. 2023 Dec 12;51(1):15. doi: 10.1007/s11033-023-08944-x.

Abstract

Objective: Immunoglobulin-A vasculitis (IgAV) is an inflammatory disease that affects small blood vessels. This study was performed to identify an association between protein tyrosine phosphatase non-receptor type 22 (PTPN22) + 788G > A (rs33996649), transforming growth factor-beta (TGF-β) -509C > T (rs18004069), interleukin 1-beta (IL-1β) -511C > T (rs16944), interleukin 5 (IL-5) -746C/T (rs2069812), and angiotensin-converting enzyme (ACE) I/D (rs4646994) gene polymorphisms, susceptibility to IgAV, as well as the mRNA levels of IL-1β, IL-1β, and TGF-β.

Method: A total of 53 patients with IgAV and 50 healthy controls were enrolled. PTPN22, TGF-β, IL-1β, ACE gene polymorphisms, ACE gene I/D polymorphisms, and mRNA expression levels were analyzed using the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method, allele-specific PCR, and real-time PCR with TaqMan kits, respectively.

Results: PTPN22, TGF-β, IL-1β, IL-5, and ACE variants showed no genotype or allele differences between patients with IgAV and controls. Increased levels of IL-1β and TGF-β mRNA expressions were observed in patients with IgAV (p < 0.001). Patients with the IL-1β AG genotype showed significantly increased amounts of arthritis than patients with non-AG (p = 0.004). Age at disease onset was found to be significantly different in patients with IgAV according to the presence of TGF-β TT genotype (p = 0.047).

Conclusion: Polymorphisms in PTPN22, TGF-β, IL-5, IL-1β, and ACE genes are unlikely to confer susceptibility to IgAV. However, the presence of the AG genotype of IL-1β is associated with susceptibility to IgAV-related arthritis. This is the first study to report a significant increase in serum mRNA levels of IL-1β and TGF-β in IgAV patients, supporting a susceptibility to IgAV in childhood.

Keywords: ACE gene polymorphism; IgA vasculitis; Proinflammatory cytokine gene polymorphisms.

MeSH terms

  • Arthritis*
  • Case-Control Studies
  • Child
  • Gene Expression
  • Gene Frequency / genetics
  • Genetic Predisposition to Disease
  • Genotype
  • Humans
  • IgA Vasculitis* / genetics
  • Interleukin-5 / genetics
  • Peptidyl-Dipeptidase A / genetics
  • Polymorphism, Genetic / genetics
  • Polymorphism, Single Nucleotide / genetics
  • RNA, Messenger / genetics
  • Real-Time Polymerase Chain Reaction
  • Transforming Growth Factor beta / genetics

Substances

  • Interleukin-5
  • Transforming Growth Factor beta
  • Peptidyl-Dipeptidase A
  • RNA, Messenger
  • PTPN22 protein, human