G-quadruplex in the TMV Genome Regulates Viral Proliferation and Acts as Antiviral Target of Photodynamic Therapy

PLoS Pathog. 2023 Dec 7;19(12):e1011796. doi: 10.1371/journal.ppat.1011796. eCollection 2023 Dec.

Abstract

Plant viruses seriously disrupt crop growth and development, and classic protein-targeted antiviral drugs could not provide complete protection against them. It is urgent to develop antiviral compounds with novel targets. Photodynamic therapy shows potential in controlling agricultural pests, but nonselective damage from reactive oxygen species (ROS) unexpectedly affects healthy tissues. A G-quadruplex (G4)-forming sequence in the tobacco mosaic virus (TMV) genome was identified to interfere the RNA replication in vitro, and affect the proliferation of TMV in tobacco. N-methyl mesoporphyrin IX stabilizing the G4 structure exhibited inhibition against viral proliferation, which was comparable to the inhibition effect of ribavirin. This indicated that G4 could work as an antiviral target. The large conjugate planes shared by G4 ligands and photosensitizers (PSs) remind us that the PSs could work as antiviral agents by targeting G4 in the genome of TMV. Chlorin e6 (Ce6) was identified to stabilize the G4 structure in the dark and selectively cleave the G4 sequence by producing ROS upon LED-light irradiation, leading to 92.2% inhibition against TMV in vivo, which is higher than that of commercial ningnanmycin. The inhibition of Ce6 was lost against the mutant variants lacking the G4-forming sequence. These findings indicated that the G-quadruplex in the TMV genome worked as an important structural element regulating viral proliferation, and could act as the antiviral target of photodynamic therapy.

MeSH terms

  • Antiviral Agents / chemistry
  • Antiviral Agents / pharmacology
  • Cell Proliferation
  • Photochemotherapy*
  • Reactive Oxygen Species / pharmacology
  • Structure-Activity Relationship
  • Tobacco Mosaic Virus*

Substances

  • Reactive Oxygen Species
  • Antiviral Agents

Grants and funding

This work was supported financially by the National Natural Science Foundation of China (22077043, 21732002 to DW and 32272491 to FL), the Fundamental Research Funds for the Central Universities (2662023PY005 to DW), HZAU-AGIS Cooperation Fund (SZYJY2022016 to DW), Natural Science Foundation of Hubei Province (2021CFA061 to DW, 2017CFB233 to SL), and the Funding from National Key Laboratory of Agricultural Microbiology(AML2023B05 to DW). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.