Lysine acetylation regulates the AT-rich DNA possession ability of H-NS

Nucleic Acids Res. 2024 Feb 28;52(4):1645-1660. doi: 10.1093/nar/gkad1172.

Abstract

H-NS, the histone-like nucleoid-structuring protein in bacteria, regulates the stability of the bacterial genome by inhibiting the transcription of horizontally transferred genes, such as the type III and type VI secretion systems (T3/T6SS). While eukaryotic histone posttranslational modifications (PTMs) have been extensively studied, little is known about prokaryotic H-NS PTMs. Here, we report that the acetylation of H-NS attenuates its ability to silence horizontally transferred genes in response to amino acid nutrition and immune metabolites. Moreover, LC-MS/MS profiling showed that the acetyllysine sites of H-NS and K120 are indispensable for its DNA-binding ability. Acetylation of K120 leads to a low binding affinity for DNA and enhances T3/T6SS expression. Furthermore, acetylation of K120 impairs the AT-rich DNA recognition ability of H-NS. In addition, lysine acetylation in H-NS modulates in vivo bacterial virulence. These findings reveal the mechanism underlying H-NS PTMs and propose a novel mechanism by which bacteria counteract the xenogeneic silencing of H-NS.

MeSH terms

  • Acetylation
  • Bacteria / genetics
  • Bacterial Proteins* / genetics
  • Bacterial Proteins* / metabolism
  • Chromatography, Liquid
  • DNA / genetics
  • DNA / metabolism
  • DNA-Binding Proteins* / genetics
  • Gene Expression Regulation, Bacterial
  • Histones / genetics
  • Histones / metabolism
  • Lysine / metabolism
  • Protein Processing, Post-Translational*
  • Tandem Mass Spectrometry

Substances

  • Bacterial Proteins
  • DNA
  • DNA-Binding Proteins
  • Histones
  • Lysine
  • H-NS protein, bacteria