Bacterial cyclophane-containing RiPPs from radical SAM enzymes

Nat Prod Rep. 2024 May 22;41(5):708-720. doi: 10.1039/d3np00030c.

Abstract

Covering: 2016 to 2023Ribosomally synthesized and posttranslationally modified peptides (RiPPs) continue to be a rich source of chemically diverse and bioactive peptide natural products. In recent years, cyclophane-containing RiPP natural products and their biosynthetic pathways have been more frequently encountered. This highlight will focus on bacterial monoaryl cyclophane-containing RiPPs. This class of RiPPs is produced by radical SAM/SPASM enzymes that form a crosslink between the aromatic ring and sidechain of two amino acid residues of the precursor peptide. Selected natural products from these pathways exhibit specific antibacterial activity against gram-negative pathogens. The approaches used to discover these pathways and products will be described and categorized as natural product-first or enzyme-first. The breadth of ring systems formed by the enzymes, enzyme mechanism, and recent reports of synthetic methods for constructing these ring systems will also be presented. Bacterial cyclophane-containing RiPPs and their biosynthetic enzymes represent an untapped source of scaffolds for drug discovery and tools for synthetic biology.

Publication types

  • Review

MeSH terms

  • Anti-Bacterial Agents / chemistry
  • Anti-Bacterial Agents / metabolism
  • Anti-Bacterial Agents / pharmacology
  • Bacteria / enzymology
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Biological Products* / chemistry
  • Biological Products* / metabolism
  • Biological Products* / pharmacology
  • Biosynthetic Pathways
  • Cyclophanes
  • Molecular Structure
  • Peptides / chemistry
  • Peptides / metabolism
  • Peptides / pharmacology
  • Protein Processing, Post-Translational*
  • S-Adenosylmethionine / metabolism