Development of a bispecific nanobody conjugate broadly neutralizes diverse SARS-CoV-2 variants and structural basis for its broad neutralization

PLoS Pathog. 2023 Nov 30;19(11):e1011804. doi: 10.1371/journal.ppat.1011804. eCollection 2023 Nov.

Abstract

The continuous emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants with increased transmissibility and profound immune-escape capacity makes it an urgent need to develop broad-spectrum therapeutics. Nanobodies have recently attracted extensive attentions due to their excellent biochemical and binding properties. Here, we report two high-affinity nanobodies (Nb-015 and Nb-021) that target non-overlapping epitopes in SARS-CoV-2 S-RBD. Both nanobodies could efficiently neutralize diverse viruses of SARS-CoV-2. The neutralizing mechanisms for the two nanobodies are further delineated by high-resolution nanobody/S-RBD complex structures. In addition, an Fc-based tetravalent nanobody format is constructed by combining Nb-015 and Nb-021. The resultant nanobody conjugate, designated as Nb-X2-Fc, exhibits significantly enhanced breadth and potency against all-tested SARS-CoV-2 variants, including Omicron sub-lineages. These data demonstrate that Nb-X2-Fc could serve as an effective drug candidate for the treatment of SARS-CoV-2 infection, deserving further in-vivo evaluations in the future.

MeSH terms

  • Antibodies, Neutralizing / pharmacology
  • Antibodies, Viral
  • COVID-19*
  • Epitopes
  • Humans
  • SARS-CoV-2
  • Single-Domain Antibodies* / pharmacology
  • Spike Glycoprotein, Coronavirus

Substances

  • Single-Domain Antibodies
  • Epitopes
  • Spike Glycoprotein, Coronavirus
  • Antibodies, Neutralizing
  • Antibodies, Viral
  • spike protein, SARS-CoV-2

Supplementary concepts

  • SARS-CoV-2 variants

Grants and funding

This work was supported by the National Key Research and Development Program of China (Grant no. 2021YFC2301402 to G.L.), the National Natural Science Foundation of China (Grant nos. 81971925 and 82041042 to G.L.; Grant no. 32300781 to Z.C.), the 1.3.5 project for disciplines of excellence, West China Hospital, Sichuan University (Grant no. ZYYC20008 to G.L.), the National Postdoctoral Program for Innovative Talents of China (Grant no. BX20230243 to S.L.), and the China Postdoctoral Science Foundation (Grant no. 2020TQ0216 to F.Y.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.