Dataset of single nucleotide polymorphisms of immune-associated genes in patients with SARS-CoV-2 infection

PLoS One. 2023 Nov 16;18(11):e0287725. doi: 10.1371/journal.pone.0287725. eCollection 2023.

Abstract

The SARS-CoV-2 pandemic has affected nations globally leading to illness, death, and economic downturn. Why disease severity, ranging from no symptoms to the requirement for extracorporeal membrane oxygenation, varies between patients is still incompletely understood. Consequently, we aimed at understanding the impact of genetic factors on disease severity in infection with SARS-CoV-2. Here, we provide data on demographics, ABO blood group, human leukocyte antigen (HLA) type, as well as next-generation sequencing data of genes in the natural killer cell receptor family, the renin-angiotensin-aldosterone and kallikrein-kinin systems and others in 159 patients with SARS-CoV-2 infection, stratified into seven categories of disease severity. We provide single-nucleotide polymorphism (SNP) data on the patients and a protein structural analysis as a case study on a SNP in the SIGLEC7 gene, which was significantly associated with the clinical score. Our data represent a resource for correlation analyses involving genetic factors and disease severity and may help predict outcomes in infections with future SARS-CoV-2 variants and aid vaccine adaptation.

MeSH terms

  • Angiotensins
  • COVID-19* / genetics
  • Humans
  • Polymorphism, Single Nucleotide
  • SARS-CoV-2 / genetics

Substances

  • Angiotensins

Supplementary concepts

  • SARS-CoV-2 variants

Grants and funding

This work was supported by the Goethe-Corona-Funds of the Goethe University Frankfurt to D.S.K. We acknowledge funding from the Alfons und Gertrud Kassel-Stiftung as part of the center for data science and AI and the DFG Cluster of Excellence Cardio Pulmonary Institute (CPI) [EXC 2026]. We also acknowledge funding from the consortia ACLF-I (Acute Liver Failure - Initiative) and ENABLE (Unraveling mechanisms driving cellular homeostasis, inflammation and infection to enable new approaches in translational medicine) (Hessian Ministry of the Arts and Sciences). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.