Identification of a Novel FOXP1 Variant in a Patient with Hypotonia, Intellectual Disability, and Severe Speech Impairment

Genes (Basel). 2023 Oct 18;14(10):1958. doi: 10.3390/genes14101958.

Abstract

The FOXP subfamily includes four different transcription factors: FOXP1, FOXP2, FOXP3, and FOXP4, all with important roles in regulating gene expression from early development through adulthood. Haploinsufficiency of FOXP1, due to deleterious variants (point mutations, copy number variants) disrupting the gene, leads to an emerging disorder known as "FOXP1 syndrome", mainly characterized by intellectual disability, language impairment, dysmorphic features, and multiple congenital abnormalities with or without autistic features in some affected individuals (MIM 613670). Here we describe a 10-year-old female patient, born to unrelated parents, showing hypotonia, intellectual disability, and severe language delay. Targeted resequencing analysis allowed us to identify a heterozygous de novo FOXP1 variant c.1030C>T, p.(Gln344Ter) classified as likely pathogenetic according to the American College of Medical Genetics and Genomics guidelines. To the best of our knowledge, our patient is the first to date to report carrying this stop mutation, which is, for this reason, useful for broadening the molecular spectrum of FOXP1 clinically relevant variants. In addition, our results highlight the utility of next-generation sequencing in establishing an etiological basis for heterogeneous conditions such as neurodevelopmental disorders and providing additional insight into the phenotypic features of FOXP1-related syndrome.

Keywords: FOXP1; neurodevelopmental disorders; targeted resequencing.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Child
  • Female
  • Forkhead Transcription Factors / genetics
  • Forkhead Transcription Factors / metabolism
  • Humans
  • Intellectual Disability* / genetics
  • Intellectual Disability* / pathology
  • Muscle Hypotonia / genetics
  • Repressor Proteins / genetics
  • Repressor Proteins / metabolism
  • Speech
  • Syndrome
  • Transcription Factors

Substances

  • Repressor Proteins
  • Transcription Factors
  • FOXP1 protein, human
  • Forkhead Transcription Factors
  • FOXP4 protein, human

Grants and funding

This work was supported by the Ricerca Corrente Program 2022–2024 from the Italian Ministry of Health to Massimo Carella.