Biological Applications of Synthetic Binders Isolated from a Conceptually New Adhiron Library

Biomolecules. 2023 Oct 17;13(10):1533. doi: 10.3390/biom13101533.

Abstract

Background: Adhirons are small (10 kDa) synthetic ligands that might represent an alternative to antibody fragments and to alternative scaffolds such as DARPins or affibodies.

Methods: We prepared a conceptionally new adhiron phage display library that allows the presence of cysteines in the hypervariable loops and successfully panned it against antigens possessing different characteristics.

Results: We recovered binders specific for membrane epitopes of plant cells by panning the library directly against pea protoplasts and against soluble C-Reactive Protein and SpyCatcher, a small protein domain for which we failed to isolate binders using pre-immune nanobody libraries. The best binders had a binding constant in the low nM range, were produced easily in bacteria (average yields of 15 mg/L of culture) in combination with different tags, were stable, and had minimal aggregation propensity, independent of the presence or absence of cysteine residues in their loops.

Discussion: The isolated adhirons were significantly stronger than those isolated previously from other libraries and as good as nanobodies recovered from a naïve library of comparable theoretical diversity. Moreover, they proved to be suitable reagents for ELISA, flow cytometry, the western blot, and also as capture elements in electrochemical biosensors.

Keywords: C-Reactive Protein; SpyCatcher; adhirons; affimers; in vitro panning; phage display.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Complementarity Determining Regions
  • Enzyme-Linked Immunosorbent Assay
  • Epitopes
  • Peptide Library*
  • Single-Domain Antibodies* / pharmacology

Substances

  • Peptide Library
  • Single-Domain Antibodies
  • Complementarity Determining Regions
  • Epitopes

Grants and funding

G.V. was funded by the Big Idea Research Grant from the Provost’s Fund for Innovation in Research at Louisiana State University. A.d.M. was supported by grants P3-0428, N4-0282, and N4-0325 provided by the Javne agencije za znanstvenoraziskovalno in inovacijsko dejavnost Republike Slovenije and by the CRP grant 20/026 offered by ICGEB.