Self-assembling a 1,4-dioxane-degrading consortium and identifying the key role of Shinella sp. through dilution-to-extinction and reculturing

Microbiol Spectr. 2023 Dec 12;11(6):e0178723. doi: 10.1128/spectrum.01787-23. Epub 2023 Oct 26.

Abstract

Assembling a functional microbial consortium and identifying key degraders involved in the degradation of 1,4-dioxane are crucial for the design of synergistic consortia used in enhancing the bioremediation of 1,4-dioxane-contaminated sites. However, due to the vast diversity of microbes, assembling a functional consortium and identifying novel degraders through a simple method remain a challenge. In this study, we reassembled 1,4-dioxane-degrading microbial consortia using a simple and easy-to-operate method by combining dilution-to-extinction and reculture techniques. We combined differential analysis of community structure and metabolic function and confirmed that Shinella species have a stronger 1,4-dioxane degradation ability than Xanthobacter species in the enriched consortium. In addition, a new dioxane-degrading bacterium was isolated, Shinella yambaruensis, which verified our findings. These results demonstrate that DTE and reculture techniques can be used beyond diversity reduction to assemble functional microbial communities, particularly to identify key degraders in contaminant-degrading consortia.

Keywords: 1,4-dioxane; consortium; dilution-to-extinction; key degraders; next-generation sequencing.

MeSH terms

  • Biodegradation, Environmental
  • Dioxanes* / metabolism
  • Microbial Consortia
  • Microbiota*

Substances

  • 1,4-dioxane
  • Dioxanes