Gallionellaceae pangenomic analysis reveals insight into phylogeny, metabolic flexibility, and iron oxidation mechanisms

mSystems. 2023 Dec 21;8(6):e0003823. doi: 10.1128/msystems.00038-23. Epub 2023 Oct 26.

Abstract

Neutrophilic iron-oxidizing bacteria (FeOB) produce copious iron (oxyhydr)oxides that can profoundly influence biogeochemical cycles, notably the fate of carbon and many metals. To fully understand environmental microbial iron oxidation, we need a thorough accounting of iron oxidation mechanisms. In this study, we show the Gallionellaceae FeOB genomes encode both characterized iron oxidases as well as uncharacterized multiheme cytochromes (MHCs). MHCs are predicted to transfer electrons from extracellular substrates and likely confer metabolic capabilities that help Gallionellaceae occupy a range of different iron- and mineral-rich niches. Gallionellaceae appear to specialize in iron oxidation, so it would be advantageous for them to have multiple mechanisms to oxidize various forms of iron, given the many iron minerals on Earth, as well as the physiological and kinetic challenges faced by FeOB. The multiple iron/mineral oxidation mechanisms may help drive the widespread ecological success of Gallionellaceae.

Keywords: extracellular electron transfer; iron oxidation; iron-oxidizing bacteria; multiheme cytochrome; pangenome.

MeSH terms

  • Gallionellaceae*
  • Iron* / metabolism
  • Minerals / metabolism
  • Oxidation-Reduction
  • Phylogeny

Substances

  • Iron
  • Minerals