Maternally inherited siRNAs initiate piRNA cluster formation

Mol Cell. 2023 Nov 2;83(21):3835-3851.e7. doi: 10.1016/j.molcel.2023.09.033. Epub 2023 Oct 23.

Abstract

PIWI-interacting RNAs (piRNAs) guide transposable element repression in animal germ lines. In Drosophila, piRNAs are produced from heterochromatic loci, called piRNA clusters, which act as information repositories about genome invaders. piRNA generation by dual-strand clusters depends on the chromatin-bound Rhino-Deadlock-Cutoff (RDC) complex, which is deposited on clusters guided by piRNAs, forming a positive feedback loop in which piRNAs promote their own biogenesis. However, how piRNA clusters are formed before cognate piRNAs are present remains unknown. Here, we report spontaneous de novo piRNA cluster formation from repetitive transgenic sequences. Cluster formation occurs over several generations and requires continuous trans-generational maternal transmission of small RNAs. We discovered that maternally supplied small interfering RNAs (siRNAs) trigger de novo cluster activation in progeny. In contrast, siRNAs are dispensable for cluster function after its establishment. These results reveal an unexpected interplay between the siRNA and piRNA pathways and suggest a mechanism for de novo piRNA cluster formation triggered by siRNAs.

Keywords: Drosophila; piRNA; piRNA biogenesis; piRNA cluster formation; siRNA; transposable elements.

MeSH terms

  • Animals
  • Chromatin / metabolism
  • DNA Transposable Elements / genetics
  • Drosophila / genetics
  • Drosophila Proteins* / genetics
  • Drosophila Proteins* / metabolism
  • Drosophila melanogaster / genetics
  • Drosophila melanogaster / metabolism
  • Maternal Inheritance
  • Piwi-Interacting RNA*
  • RNA, Small Interfering / genetics
  • RNA, Small Interfering / metabolism

Substances

  • RNA, Small Interfering
  • Piwi-Interacting RNA
  • Chromatin
  • Drosophila Proteins
  • DNA Transposable Elements