High-Affinity Host-Guest Recognition for Efficient Assembly and Enzymatic Responsiveness of DNA Nanostructures

Small. 2024 Mar;20(9):e2307585. doi: 10.1002/smll.202307585. Epub 2023 Oct 17.

Abstract

The combination of multiple orthogonal interactions enables hierarchical complexity in self-assembled nanoscale materials. Here, efficient supramolecular polymerization of DNA origami nanostructures is demonstrated using a multivalent display of small molecule host-guest interactions. Modification of DNA strands with cucurbit[7]uril (CB[7]) and its adamantane guest, yielding a supramolecular complex with an affinity of order 1010 m-1 , directs hierarchical assembly of origami monomers into 1D nanofibers. This affinity regime enables efficient polymerization; a lower-affinity β-cyclodextrin-adamantane complex does not promote extended structures at a similar valency. Finally, the utility of the high-affinity CB[7]-adamantane interactions is exploited to enable responsive enzymatic actuation of origami nanofibers assembled using peptide linkers. This work demonstrates the power of high-affinity CB[7]-guest recognition as an orthogonal axis to drive self-assembly in DNA nanotechnology.

Keywords: DNA nanotechnology; host-guest chemistry; peptide-DNA nanotechnology; self-assembly; supramolecular chemistry.

MeSH terms

  • Adamantane*
  • DNA
  • Nanofibers*
  • Nanostructures*
  • Nanotechnology

Substances

  • Adamantane
  • DNA