LncRNA NKILA inhibits HBV replication by repressing NF-κB signalling activation

Virol Sin. 2024 Feb;39(1):44-55. doi: 10.1016/j.virs.2023.10.002. Epub 2023 Oct 11.

Abstract

Hepatitis B virus (HBV) infection results in liver cirrhosis and hepatocellular carcinoma (HCC). HBx/nuclear factor (NF)-κB pathway plays a role in HBV replication. However, whether NF-κB-interacting long noncoding RNA (NKILA), a suppressor of NF-κB activation, regulates HBV replication remains largely unknown. In this study, gain-and-loss experiments showed that NKILA inhibited HBV replication by inhibiting NF-κB activity. In turn, HBV infection down-regulated NKILA expression. In addition, expression levels of NKILA were lower in the peripheral blood-derived monocytes (PBMCs) of HBV-positive patients than in healthy individuals, which were correlated with HBV viral loads. And a negative correlation between NKILA expression level and HBV viral loads was observed in blood serum from HBV-positive patients. Lower levels of endogenous NKILA were also observed in HepG2 cells expressing a 1.3-fold HBV genome, HBV-infected HepG2-NTCP cells, stable HBV-producing HepG2.2.15 and HepAD38 ​cells, compared to those HBV-negative cells. Furthermore, HBx was required for NKILA-mediated inhibition on HBV replication. NKILA decreased HBx-induced NF-κB activation by interrupting the interaction between HBx and p65, whereas NKILA mutants lack of essential domains for NF-ĸB inhibition, lost the ability to inhibit HBV replication. Together, our data demonstrate that NKILA may serve as a suppressor of HBV replication via NF-ĸB signalling.

Keywords: Chronic hepatitis B virus (HBV); HBx; LncRNA; NF-ĸB signalling; NF-κB-interacting long noncoding RNA (NKILA); Viral replication.

MeSH terms

  • Carcinoma, Hepatocellular* / pathology
  • Hepatitis B virus / genetics
  • Hepatitis B*
  • Humans
  • Liver Neoplasms*
  • NF-kappa B / metabolism
  • RNA, Long Noncoding* / genetics
  • Viral Regulatory and Accessory Proteins

Substances

  • NF-kappa B
  • RNA, Long Noncoding
  • Viral Regulatory and Accessory Proteins
  • long noncoding RNA NKILA, human