Vertical connectivity of microbiome and metabolome reveals depth-dependent variations across a deep cold-seep water column

Environ Res. 2023 Dec 15;239(Pt 1):117310. doi: 10.1016/j.envres.2023.117310. Epub 2023 Oct 5.

Abstract

Deciphering the vertical connectivity of oceanic microbiome and metabolome is crucial for understanding the carbon sequestration and achieving the carbon neutrality. However, we lack a systematic view of the interplay among particle transport, microbial community, and metabolic trait across depths. Through integrating the biogeochemical, microbial, and metabolic characteristics of a deep cold-seep water column (∼1989 m), we find the altered connectivity of microbial community and dissolved organic matter (DOM) across depths. Both the microbial communities (bacteria and protists) and DOM show a clear compositional connectivity from surface to the depth of 1000 m, highlighting the controls of sinking particle over microbial connectivity from the epipelagic to mesopelagic zone. However, due to the biological migration and ocean mixing, the fecal-associated bacteria and protistan consumers unexpectedly emerge and the degradation index of DOM substantially alters around 1000-1200 m. Collectively, we unveil the significance of multi-faceted particle dispersion, which supports the connectivity and variability of deep ocean microbial communities.

Keywords: Cold-seep; Dissolved organic matter; Microbial communities; Particle transport.

MeSH terms

  • Carbon
  • Carbon Sequestration
  • Dissolved Organic Matter
  • Metabolome*
  • Microbiota*
  • Water

Substances

  • Carbon
  • Dissolved Organic Matter
  • Water