Metabolic engineering of commensal bacteria for gut butyrate delivery and dissection of host-microbe interaction

Metab Eng. 2023 Nov:80:94-106. doi: 10.1016/j.ymben.2023.09.008. Epub 2023 Sep 17.

Abstract

An overwhelming number of studies have reported the correlation of decreased abundance of butyrate-producing commensals with a wide range of diseases. However, the molecular-level mechanisms whereby gut butyrate causally affects the host mucosal immunity and pathogenesis were poorly understood, hindered by the lack of efficient tools to control intestinal butyrate. Here we engineered a facultative anaerobic commensal bacterium to delivery butyrate at the intestinal mucosal surface, and implemented it to dissect the causal role of gut butyrate in regulating host intestinal homeostasis in a model of murine chronic colitis. Mechanistically, we show that gut butyrate protected against colitis and preserved intestinal mucosal homeostasis through its inhibiting effect on the key pyroptosis executioner gasdermin D (GSDMD) of colonic epithelium, via functioning as an HDAC3 inhibitor. Overall, our work presents a new avenue to build synthetic living delivery bacteria to decode causal molecules at the host-microbe interface with molecular-level insights.

Keywords: Butyrate; Colitis; Engineered bacteria; In situ delivery; Pyroptosis.

MeSH terms

  • Animals
  • Bacteria / genetics
  • Bacteria / metabolism
  • Butyrates / metabolism
  • Colitis*
  • Gastrointestinal Microbiome* / genetics
  • Host Microbial Interactions
  • Metabolic Engineering
  • Mice

Substances

  • Butyrates