LGP2 directly interacts with flavivirus NS5 RNA-dependent RNA polymerase and downregulates its pre-elongation activities

PLoS Pathog. 2023 Sep 1;19(9):e1011620. doi: 10.1371/journal.ppat.1011620. eCollection 2023 Sep.

Abstract

LGP2 is a RIG-I-like receptor (RLR) known to bind and recognize the intermediate double-stranded RNA (dsRNA) during virus infection and to induce type-I interferon (IFN)-related antiviral innate immune responses. Here, we find that LGP2 inhibits Zika virus (ZIKV) and tick-borne encephalitis virus (TBEV) replication independent of IFN induction. Co-immunoprecipitation (Co-IP) and confocal immunofluorescence data suggest that LGP2 likely colocalizes with the replication complex (RC) of ZIKV by interacting with viral RNA-dependent RNA polymerase (RdRP) NS5. We further verify that the regulatory domain (RD) of LGP2 directly interacts with RdRP of NS5 by biolayer interferometry assay. Data from in vitro RdRP assays indicate that LGP2 may inhibit polymerase activities of NS5 at pre-elongation but not elongation stages, while an RNA-binding-defective LGP2 mutant can still inhibit RdRP activities and virus replication. Taken together, our work suggests that LGP2 can inhibit flavivirus replication through direct interaction with NS5 protein and downregulates its polymerase pre-elongation activities, demonstrating a distinct role of LGP2 beyond its function in innate immune responses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Encephalitis Viruses, Tick-Borne*
  • Humans
  • Nucleotidyltransferases
  • RNA, Double-Stranded
  • RNA-Dependent RNA Polymerase / genetics
  • Zika Virus Infection*
  • Zika Virus*

Substances

  • RNA-Dependent RNA Polymerase
  • Nucleotidyltransferases
  • RNA, Double-Stranded

Grants and funding

This work was supported by the National Key Research and Development Program (2018YFA0507200 to P.G. and Z.Z.), China Postdoctoral Science Foundation (2020M672579 to Z.T.), National Natural Science Foundation of China (32000136 to J.W.; 32070185 to P.G.), Youth Innovation Promotion Association Program of Chinese Academy of Sciences (2022341 to J.W.), Creative Research Group Program of Natural Science Foundation of Hubei Province, China (2022CFA021 to P.G. and J.W.), and Key Biosafety Science and Technology Program of Hubei Jiangxia Laboratory (JXBS001 to P.G.). The funders had no role in study design, data collection, and interpretation, or submitting the work for publication.