Phycocyanobilin is a new binding partner of human alpha-2-macroglobulin that protects the protein against oxidative stress

Miloš Šunderić; Nikola Gligorijević; Miloš Milčić; Simeon Minić; Olgica Nedić; Milan Nikolić

doi:10.1080/07391102.2023.2248273

Phycocyanobilin is a new binding partner of human alpha-2-macroglobulin that protects the protein against oxidative stress

J Biomol Struct Dyn. 2023 Aug 17:1-11. doi: 10.1080/07391102.2023.2248273. Online ahead of print.

Authors

Miloš Šunderić¹, Nikola Gligorijević², Miloš Milčić³, Simeon Minić⁴, Olgica Nedić¹, Milan Nikolić⁴

Affiliations

¹ Department for Metabolism, Institute for the Application of Nuclear Energy, University of Belgrade, Belgrade/Zemun, Serbia.
² Department of Chemistry, Institute of Chemistry, Technology, and Metallurgy, National Institute of the Republic of Serbia, University of Belgrade, Belgrade, Serbia.
³ Department of General and Inorganic Chemistry, Faculty of Chemistry, University of Belgrade, Belgrade, Serbia.
⁴ Department of Biochemistry and Center of Excellence for Molecular Food Sciences, Faculty of Chemistry, University of Belgrade, Belgrade, Serbia.

PMID: 37592733
DOI: 10.1080/07391102.2023.2248273

Abstract

Under simulated physiological conditions, this study investigates the interaction between nutraceutical phycocyanobilin (PCB) and the universal anti-protease protein human alpha-2-macroglobulin (α₂M). Extensive molecular docking analyses on multiple α2M conformations, spectroscopic techniques, and α2M activity assays were utilized to examine the complex formation. The results revealed that for every protein conformation, two high energy binding sites exist: the first, conformationally independent, at the interface region between two monomer chains and the second, conformationally dependent, in the pocket composed of amino acids from four distinct domains (TED, RBD, CUB, and MG2) of the single protein chain. Spectrofluorimetric measurements indicated a moderate affinity between α₂M and PCB with a moderately high binding constant of 6.3 $\times$ 10⁵ M^-1 at 25 °C. The binding of PCB to α₂M resulted in minor changes in the secondary structure content of α₂M. Furthermore, PCB protected α₂M from oxidation and preserved its anti-protease activity in the oxidative environment. These findings suggest that PCB binding could indirectly impact the body's response to oxidative stress by influencing α₂M's role in controlling enzyme activity during the inflammatory process.Communicated by Ramaswamy H. Sarma.

Keywords: Alpha-2-macroglobulin; docking; phycocyanobilin; protein-ligand interactions; spectroscopy.