Characterization of Proteus mirabilis and associated plasmids isolated from anaerobic dairy cattle manure digesters

PLoS One. 2023 Aug 10;18(8):e0289703. doi: 10.1371/journal.pone.0289703. eCollection 2023.

Abstract

Proteus mirabilis is an opportunistic pathogen associated with a variety of human infections, including urinary tract infections. The prevalence of P. mirabilis in foods of animal origin and in the manure by-products created in animal production is not well documented. Further, the prevalence and persistence of extended-spectrum cephalosporin (ESC) resistant P. mirabilis is largely unknown. In this study, we characterized ESC-resistant P. mirabilis recovered from various stages of dairy manure anaerobic digestion. Isolates were screened by PCR for blaCTX-M, blaCMY and blaSHV, and antimicrobial susceptibility testing was performed. Fifty-six P. mirabilis carrying CTX-M were sequenced with short and long read sequencing technologies, and the assembled chromosomes and plasmids were compared. ESC-resistant Proteus was found in four of the six manure digesters, an indication that not all digesters were colonized with resistant strains. Both CTX-M-1 and CTX-M-15 plasmids were found in P. mirabilis isolates. Transfer of plasmid DNA by conjugation was also explored, with ESC-resistance plasmids able to transfer to Escherichia coli at high frequency. We concluded that P. mirabilis can harbour and transfer ESC-resistance genes and plasmids, and may be an overlooked reservoir of antimicrobial resistance.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anaerobiosis
  • Animals
  • Anti-Bacterial Agents / pharmacology
  • Anti-Infective Agents*
  • Cattle
  • Cephalosporins
  • Escherichia coli / genetics
  • Humans
  • Manure
  • Plasmids / genetics
  • Proteus mirabilis* / genetics
  • beta-Lactamases / genetics

Substances

  • Manure
  • Cephalosporins
  • beta-Lactamases
  • Anti-Infective Agents
  • Anti-Bacterial Agents

Grants and funding